PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g14880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 158aa    MW: 17642.8 Da    PI: 5.9899
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g14880genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.4e-172366148
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                ++y+GVr+++ +gr++AeIr p++   ++r++lg+++taeeAa a++ 
  CA04g14880 23 TKYHGVRRRP-WGRYAAEIRNPNT---KQRHWLGTYDTAEEAAFAYDI 66
                69********.**********933...5******************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.79E-282381No hitNo description
PfamPF008475.1E-112365IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-182482IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-262481IPR001471AP2/ERF domain
PROSITE profilePS5103220.4422482IPR001471AP2/ERF domain
SMARTSM003804.1E-282488IPR001471AP2/ERF domain
PRINTSPR003679.3E-92536IPR001471AP2/ERF domain
PRINTSPR003679.3E-94763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MENITNIPQL HVRNLGRSSR HSTKYHGVRR RPWGRYAAEI RNPNTKQRHW LGTYDTAEEA  60
AFAYDISSIA FCGIENARTN FVYPFPSFPS LYNSPAPPSP PPLSPPPPPP STPELEVFEN  120
NCMEIEMTDN AGDDESLLIA SILQSFCHTN TLDKLAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1424731464Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for correct embryo patterning and cotyledon organogenesis. May regulate positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16339853, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145251e-166CU914525.3 S.lycopersicum DNA sequence from clone LE_HBa-149O17 on chromosome 4, complete sequence.
GenBankHG9755161e-166HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016570881.11e-114PREDICTED: ethylene-responsive transcription factor LEP-like
SwissprotQ9FYK51e-24ESR2_ARATH; Ethylene-responsive transcription factor ESR2
TrEMBLA0A1U8GHV91e-113A0A1U8GHV9_CAPAN; Ethylene-responsive transcription factor
TrEMBLA0A2G2ZQ941e-113A0A2G2ZQ94_CAPAN; ethylene-responsive transcription factor LEP-like
STRINGPGSC0003DMT4000565278e-78(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-26DORNROSCHEN-like
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Thoma R,Chandler JW
    Polarity in the early floral meristem of Arabidopsis.
    Plant Signal Behav, 2015. 10(4): p. e992733
    [PMID:25806573]
  3. Comelli P,Glowa D,Chandler JW,Werr W
    Founder-cell-specific transcription of the DORNRÖSCHEN-LIKE promoter and integration of the auxin response.
    J. Exp. Bot., 2016. 67(1): p. 143-55
    [PMID:26428063]
  4. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  5. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  6. Durán-Medina Y,Serwatowska J,Reyes-Olalde JI,de Folter S,Marsch-Martínez N
    The AP2/ERF Transcription Factor DRNL Modulates Gynoecium Development and Affects Its Response to Cytokinin.
    Front Plant Sci, 2017. 8: p. 1841
    [PMID:29123539]