PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g09370
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 342aa    MW: 37604.6 Da    PI: 7.3924
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g09370genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.33.3e-24114216199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+ltpsd+++ g +++p+ +a+++         ++ +   l+++d +g +We+++iyr++++r++lt+GW++Fv++++L +gD+ vF +++ +++el
  CA04g09370 114 FVKILTPSDANNGGGFSVPRFCADSIfprlnfvADPPVQ--NLVIRDIHGSEWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVSGDSAVFIRKN-RTGEL 209
                 89*********************999*****98767777..5************************************************654.88999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+v+r+
  CA04g09370 210 YVGVRRA 216
                 ****996 PP

2Auxin_resp79.77.1e-27249332183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+ +++Fev  +Pr  +++Fvvk+e ve++ ++ ++vG+R+kma+etedss++ + +Gtv++v   ++  W++S+Wr+L+
  CA04g09370 249 AAEMAARGMPFEVSCYPRPDWANFVVKAEAVEASSNMFWTVGTRVKMAVETEDSSRTACfQGTVSSVILPENGPWRGSPWRMLQ 332
                 688999****************************************************99**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-32106222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-28109221IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-22113215No hitNo description
SMARTSM010199.0E-20114217IPR003340B3 DNA binding domain
PROSITE profilePS5086312.999114217IPR003340B3 DNA binding domain
PfamPF023622.5E-22114216IPR003340B3 DNA binding domain
PfamPF065071.2E-24249332IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MQPPTAAAGN DVDPTIWRAI AGNSVRIPAV GSRAYYFPQG HAEHASSTSP VLLSGVIPPF  60
ILCRVLSVRF LADAVTDEAF AKIFLVPVNQ CYGNDVTTVN VDEEEDVEKE VVSFVKILTP  120
SDANNGGGFS VPRFCADSIF PRLNFVADPP VQNLVIRDIH GSEWEFRHIY RGTPRRHLLT  180
TGWSKFVNSK KLVSGDSAVF IRKNRTGELY VGVRRAIRGN ENCQRWTSTL LKREQTSSSG  240
SNGEAVKEAA EMAARGMPFE VSCYPRPDWA NFVVKAEAVE ASSNMFWTVG TRVKMAVETE  300
DSSRTACFQG TVSSVILPEN GPWRGSPWRM LQVTYDSVAF C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-631633623336Auxin response factor 1
4ldy_B2e-631633623336Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016569868.10.0PREDICTED: auxin response factor 17
RefseqXP_016569869.10.0PREDICTED: auxin response factor 17
RefseqXP_016569870.10.0PREDICTED: auxin response factor 17
RefseqXP_016569871.10.0PREDICTED: auxin response factor 17
RefseqXP_016569873.10.0PREDICTED: auxin response factor 17
SwissprotQ84WU61e-120ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A2G2ZNR10.0A0A2G2ZNR1_CAPAN; Auxin response factor
STRINGXP_009791106.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95601924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-118auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]