PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g09130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 173aa    MW: 19144.3 Da    PI: 4.8634
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g09130genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-192070256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 y+GVr +k +g+Wv+eIr+p   gk++r++lg+f tae+Aa+a++ a++ ++g+
  CA04g09130 20 AYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETAEMAAAAYDSAALHFRGH 70
                69****999.**********8...557***********************99996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-221978IPR016177DNA-binding domain
CDDcd000181.10E-221979No hitNo description
PROSITE profilePS5103223.3272077IPR001471AP2/ERF domain
PfamPF008472.1E-122070IPR001471AP2/ERF domain
SMARTSM003802.1E-362083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-322078IPR001471AP2/ERF domain
PRINTSPR003671.2E-102132IPR001471AP2/ERF domain
PRINTSPR003671.2E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEEYNNNTSK GNRGGGITSA YRGVRKRKWG KWVSEIREPG KKTRIWLGSF ETAEMAAAAY  60
DSAALHFRGH AAKLNFPELV DHLPKPASSC PEDIRLAAQQ AALRVETTNS SNHLTASTSQ  120
VDVAPITVGL SPSQIQAIND FPMDSPTMWS TEEPIFTYEM SDYEEMDDCL WD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-182181667ATERF1
3gcc_A4e-182181667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755237e-95HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571655.11e-128PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I25e-54ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A1U8GKH81e-127A0A1U8GKH8_CAPAN; Ethylene-responsive transcription factor
TrEMBLA0A2G2ZNB41e-127A0A2G2ZNB4_CAPAN; ethylene-responsive transcription factor ERF021
STRINGPGSC0003DMT4000459336e-84(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-48ERF family protein