PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g08750
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 103aa    MW: 11083.7 Da    PI: 7.206
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g08750genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.75.9e-3613100187
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                 +C aCk+lrrkC+ dC++apyf +e+ p+kf ++hk+FGasnv+kll+++p ++r da+ ++ yeA+ar++dP+yG+v+ i++l+qq+
  CA04g08750  13 PCGACKFLRRKCVVDCIFAPYFYSEEgPSKFDAIHKVFGASNVSKLLHNVPVDDRCDAVVTISYEAKARIKDPIYGCVANIFALEQQV 100
                 7*********************888879**********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.90312102IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-3513100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MESSSSTGGT GSPCGACKFL RRKCVVDCIF APYFYSEEGP SKFDAIHKVF GASNVSKLLH  60
NVPVDDRCDA VVTISYEAKA RIKDPIYGCV ANIFALEQQV LN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-116HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571034.19e-70PREDICTED: LOB domain-containing protein 10-like
SwissprotQ9SLB73e-53LBD16_ARATH; LOB domain-containing protein 16
TrEMBLK4CAP81e-57K4CAP8_SOLLC; Uncharacterized protein
TrEMBLM1BS161e-57M1BS16_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000516803e-57(Solanum tuberosum)
STRINGSolyc06g083930.1.14e-57(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84462230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.15e-50lateral organ boundaries-domain 16