PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g06880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family SRS
Protein Properties Length: 91aa    MW: 9779.43 Da    PI: 4.0917
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g06880genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702761.1e-23557102154
      DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                 ++++P++v+s+avf++vr+ss+++ e+++aYq++v+i+Gh+fkGiLydqG ++
  CA04g06880   5 ANNFPSKVNSTAVFQRVRMSSIEETEDQIAYQAVVDINGHIFKGILYDQGDDH 57 
                 578***********************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-20656IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016244.0E-25854IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
GLEVANNFPS KVNSTAVFQR VRMSSIEETE DQIAYQAVVD INGHIFKGIL YDQGDDHEYN  60
YMNNVGGGDS SSGGDPMPQP HNLIGVAXCE *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755155e-82HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
GenBankHG9754425e-82HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankKC3319115e-82KC331911.1 Solanum lycopersicum expression of terpenoids 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571710.11e-55PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotQ9LQZ54e-18SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLU5L3634e-42U5L363_SOLLC; Expression of terpenoids 2
STRINGPGSC0003DMT4000580597e-40(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1760044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.13e-19SHI-related sequence 5