PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g01800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 210aa    MW: 22960 Da    PI: 9.4718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g01800genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-182170255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr ++ +gr++AeIrdp     +   +++lg+f+ta eAa a++aa+ +++g
  CA04g01800 21 HYRGVRKRP-WGRYAAEIRDP-----HrkCQVWLGTFDTAVEAAMAYDAAAIEFRG 70
                6********.**********6.....336***********************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-342184IPR001471AP2/ERF domain
PfamPF008473.2E-122170IPR001471AP2/ERF domain
PROSITE profilePS5103222.4712178IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-212179IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-302178IPR001471AP2/ERF domain
CDDcd000184.48E-212179No hitNo description
PRINTSPR003671.6E-92233IPR001471AP2/ERF domain
PRINTSPR003671.6E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MARRHRRTAA AVAIAAEKEV HYRGVRKRPW GRYAAEIRDP HRKCQVWLGT FDTAVEAAMA  60
YDAAAIEFRG VKAKTNFPIP IDVTRSPSEV STVESSTAMT KMKKVEVPEE LVIVESSPLS  120
LDLTLGRSSY CLGSKLFSSQ AQNHLNARGG GSGLDRGEMF HTNRFRSIIM GSDAGDLSES  180
DSSSVVDFIG NNTKDIQIDL NFPSVPKNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-211882267ATERF1
3gcc_A1e-211882267ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571759.12e-81PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A2G2ZLH21e-154A0A2G2ZLH2_CAPAN; Ethylene-responsive transcription factor 4
STRINGXP_009618542.18e-42(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-26erf domain protein 9