PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g01790
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 194aa    MW: 21229.6 Da    PI: 7.7365
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g01790genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-171766255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr ++ +g+++AeIrdp     +   +++lg+f+t  eAa a++aa+ k++g
  CA04g01790 17 HYRGVRKRP-WGKYAAEIRDP-----HrkCQVWLGTFDTTVEAAMAYDAAAIKFRG 66
                6********.**********6.....336************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.8E-341780IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-211775IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-301774IPR001471AP2/ERF domain
PROSITE profilePS5103222.2341774IPR001471AP2/ERF domain
CDDcd000182.54E-201775No hitNo description
PfamPF008473.0E-121766IPR001471AP2/ERF domain
PRINTSPR003672.4E-121829IPR001471AP2/ERF domain
PRINTSPR003672.4E-125676IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MXRTAAATAT PVEKEVHYRG VRKRPWGKYA AEIRDPHRKC QVWLGTFDTT VEAAMAYDAA  60
AIKFRGIKAK TNFPIPVDLT RSHSEVSTVE SSTAKTKVKK VEVPEELVIV ESSHPLLDLT  120
LGRSSYCLGS KLFSSQTQNH LDAHGRDHGG LDRGEMFHTN RFGSIIMGSD AGNLSESDSS  180
SVVDFMGNDT KDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-221478267ATERF1
3gcc_A2e-221478267ATERF1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571759.11e-69PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A2G2ZLK11e-141A0A2G2ZLK1_CAPAN; Ethylene-responsive transcription factor 12
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-32erf domain protein 9