PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA04g00510
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 140aa    MW: 15952.5 Da    PI: 7.5956
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA04g00510genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-201365256
         AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56
                +y+GVr ++ +g+++AeIrd ++ +   +r++lg+f tae+Aa+a+++a+ +++g+
  CA04g00510 13 KYRGVRKRP-WGKYAAEIRDTNQqG--GTRVWLGTFNTAEDAARAYDRAAYNMRGN 65
                8********.**********53323..4*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-211373IPR016177DNA-binding domain
PfamPF008479.1E-151364IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-301374IPR001471AP2/ERF domain
CDDcd000181.34E-181373No hitNo description
SMARTSM003804.2E-331378IPR001471AP2/ERF domain
PROSITE profilePS5103223.1031372IPR001471AP2/ERF domain
PRINTSPR003671.0E-111425IPR001471AP2/ERF domain
PRINTSPR003671.0E-113854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MIKNKNNNMD EVKYRGVRKR PWGKYAAEIR DTNQQGGTRV WLGTFNTAED AARAYDRAAY  60
NMRGNLAILN FPEEYNLPRT SSHFYDNSST MAASSSSSSN VHARNDDQQR TGQVLELEYL  120
DDKVLEDLLD CDQHANKRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-331313914129Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356111.13e-71PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC55e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G2ZKY28e-94A0A2G2ZKY2_CAPAN; Ethylene-responsive transcription factor 14
STRINGPGSC0003DMT4000348711e-70(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-29ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]