PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g37120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 388aa    MW: 42536.8 Da    PI: 4.7135
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g37120genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-19113162255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  CA03g37120 113 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDVEARRIRG 162
                 69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.105113170IPR001471AP2/ERF domain
SMARTSM003809.5E-37113176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-32113172IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-22113172IPR016177DNA-binding domain
CDDcd000183.17E-32113171No hitNo description
PRINTSPR003671.2E-11114125IPR001471AP2/ERF domain
PfamPF008479.3E-12114162IPR001471AP2/ERF domain
PRINTSPR003671.2E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MCGGSIISDY IAPSRTSRRL TAELLWGRAD LSKKLKNLSN YHSKPLRSEV VDDFEADFQD  60
FKEFSYDEDD VEVDVKSFTF SAPKKSTGSK SVKAVDSDNN AADRSSKRKR KNQYRGIRQR  120
PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDVEARRI RGNKAKVNFP DEAPAPASRH  180
SVKLNPQNGL PKESLDSVPS DSTIMNSLGD GYYDSLGFPE EKPMTKQYAY GNGSSASADT  240
GFGSFTPSVG ASAGADIYFN SDVGSNSFEC SDFGWGEPCS RTPEISSVLS AAVESNEAQF  300
VVDANPQKKL KSCTNNPVAD DGNTVNRLSE ELSAYEPQMN FFNLPYMEGN WDASVDAFLN  360
TSATQNGENA MDLWSFDDVP SLMGGVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21113170260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-201121721374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562444.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X1
TrEMBLA0A1U8G3840.0A0A1U8G384_CAPAN; ethylene-responsive transcription factor RAP2-12-like isoform X1
STRINGPGSC0003DMT4000236090.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-75related to AP2 12