PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g32630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family FAR1
Protein Properties Length: 688aa    MW: 79864.9 Da    PI: 7.6629
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g32630genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.71.7e-2281164189
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                 ++Yn YA+evGF+vr+++s  +++++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++++w+v ++ leHnH+l
  CA03g32630  81 NYYNCYAREVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMMRMRMVDSKRWRVLEVTLEHNHSL 164
                 69*****************************************9988.....99*********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1981164IPR004330FAR1 DNA binding domain
PfamPF105512.0E-25283376IPR018289MULE transposase domain
PROSITE profilePS509669.829570606IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6581608IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MEEASLDSVQ DITVQDRRKF QEIESDGLDD QNSDQIESDE LFVQNGAEME SDDQNCVTDG  60
QKEFVAPAVG MEFESYDDAY NYYNCYAREV GFRVRVKNSW FKRNSREKYG AVLCCSSQGF  120
KRIKDVNRLR KETRTGCPAM MRMRMVDSKR WRVLEVTLEH NHSLGAKVYK SIKKTGVGNK  180
MKLDSNCNAE VRTIKLYRAL VIDAGANRNA NFSASRCKSS SDCHNKLNLR KGDAQAMYNY  240
FCRMQLTNPN FFYLMDLNDE GQLRNVFWID ARSRAAFAYF VDVIYIDNLY LSNKYEIPLV  300
AFVGTNHHGQ SMLLACGLLA GETKASYAWL FKAWLTCSLG RFPQTIITER CNVLETAISE  360
VFPRSLHRFA LSHIMRKVPE KLGGLRNYDV IRKALIKTIY ESLKPFDFEA AWRFMIQRFG  420
VGDHEWLCSL YNDRAKWAPV YLKDTFFAGM ATARSNETLT AFFDKYVHKQ TPLKEFLDKY  480
ELALQKKFKE EALADVESRN SNPELKTRCS FELQLSNAYT REIFKRFQLE VEEMYSCFST  540
TQLHVDGQVI IFLVKERVLE EGNRREIRDY EVLYNKAAAE VRCICSCFNF YGYLCRHALC  600
VLNFNGVEEI PSKYILSRWK KDYKRLCASD LESSSTESTE QVQWFNQLYR SALQVVEEGM  660
ISLDHYKVAL NAFEESLSRV HHIEEKT*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562966.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
RefseqXP_016562967.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
RefseqXP_016562968.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A1U8FV020.0A0A1U8FV02_CAPAN; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A2G3A2N70.0A0A2G3A2N7_CAPAN; protein FAR1-RELATED SEQUENCE 6
STRINGXP_009620425.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]