PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g31140
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-X1
Protein Properties Length: 1137aa    MW: 123114 Da    PI: 8.1807
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g31140genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.44.6e-06335353119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG+H+C+k+CH GpC+ C+
  CA03g31140 335 CGRHRCEKTCHVGPCGHCQ 353
                 ******************7 PP

2zf-NF-X116.22.4e-05399416118
    zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                 CG+H C +lCH+GpC+ C
  CA03g31140 399 CGNHICRELCHPGPCGDC 416
                 ****************99 PP

3zf-NF-X117.96.8e-06457474118
    zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                 CG H C++ CH G+C pC
  CA03g31140 457 CGVHLCEAVCHSGDCAPC 474
                 ****************** PP

4zf-NF-X118.64.2e-06553571119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG+H+C++lCH G CppC 
  CA03g31140 553 CGQHSCESLCHSGHCPPCL 571
                 ******************6 PP

5zf-NF-X1171.3e-05663678116
    zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                 CG H C ++CH+ pC+
  CA03g31140 663 CGLHACARTCHPSPCD 678
                 ***************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.04E-6156228No hitNo description
PROSITE profilePS500168.814165226IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.494168224IPR001841Zinc finger, RING-type
PROSITE patternPS013590168223IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.82E-6257318No hitNo description
SMARTSM004380.023280298IPR000967Zinc finger, NF-X1-type
PfamPF014228.5282297IPR000967Zinc finger, NF-X1-type
CDDcd060083.14E-11325373No hitNo description
SMARTSM004380.0071335354IPR000967Zinc finger, NF-X1-type
PfamPF014226.7E-4335352IPR000967Zinc finger, NF-X1-type
CDDcd060081.48E-7389434No hitNo description
SMARTSM004380.0014399418IPR000967Zinc finger, NF-X1-type
PfamPF014223.3E-4399416IPR000967Zinc finger, NF-X1-type
CDDcd060083.95E-13447495No hitNo description
SMARTSM004385.7E-4457476IPR000967Zinc finger, NF-X1-type
PfamPF014221.9E-5457474IPR000967Zinc finger, NF-X1-type
SMARTSM00438180515549IPR000967Zinc finger, NF-X1-type
PfamPF0142219515526IPR000967Zinc finger, NF-X1-type
CDDcd060083.70E-9543595No hitNo description
SMARTSM004382.0E-4553572IPR000967Zinc finger, NF-X1-type
PfamPF014221.0E-4553570IPR000967Zinc finger, NF-X1-type
CDDcd060081.98E-4600648No hitNo description
SMARTSM004380.34610628IPR000967Zinc finger, NF-X1-type
SMARTSM004380.031663693IPR000967Zinc finger, NF-X1-type
PfamPF014220.0013663678IPR000967Zinc finger, NF-X1-type
CDDcd060088.77E-5691740No hitNo description
PfamPF0142222695721IPR000967Zinc finger, NF-X1-type
SMARTSM004380.013702723IPR000967Zinc finger, NF-X1-type
PfamPF014241.7E-5830894IPR001374R3H domain
Gene3DG3DSA:3.30.70.3302.6E-4943988IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1137 aa     Download sequence    Send to blast
MSFPAQNNRR NNNNNSNHRP GRNNNNNNNS NPVQGGGARR EWVARGSNVT NAVSFSPAPI  60
AAVVIPGFGV DVSTSGGNGR ENENVAVGQV NRNRNQGYVE PKFNRGVYGN QRRERGRGRG  120
REGYNNYQEN RVERAVRGRV NEERVKDPNL PQLVQEIEEK LLKGNVECMI CYDMVRRSAA  180
MWSCSSCYSI FHLSCIKKWA RAPTSVDTSA DKNQGFNWRC PGCQSVQLTS SRDIRYVCFC  240
GKRQEPPSDL YLTPHSCGEP CGKKLEKELP GDGLSEEDLC PHVCVLQCHP GPCPPCKAFA  300
PARSCPCGKE VITTRCSDRK SVLTCGQQCG KFLDCGRHRC EKTCHVGPCG HCQIVVNACC  360
FCKKKTEAVL CGDMGVKGDI KMENGVFSCN SACENKLNCG NHICRELCHP GPCGDCALLP  420
SKIKTCCCGK TRLEEERHSC LYPIPTCSKV CGKSLRCGVH LCEAVCHSGD CAPCLVPVTQ  480
RCRCGSTSRT VECYKTQSED EKFTCDRPCG QKKNCGRHRC SERCCPLSNP KNSITDGWNP  540
HFCSMPCEKK LRCGQHSCES LCHSGHCPPC LETIFTDLTC ACGRTSIPPP LPCGTPLPSC  600
QLPCSVSQPC GHPPTHSCHF GDCLPCAVPV AKECVGGHVI LRNIPCGSKD IRCNKICGKT  660
RQCGLHACAR TCHPSPCDAT AGPSNGSRAS CGQTCGAPRR DCRHTCSALC HPFSPCPDVR  720
CEFPVTITCS CGRITANVPC DAGGQVVDHV FEASIIQKLP SPLQPIETNG KKVPLGQRKL  780
ICDDECAKME KKKVLSDAFG ITPPNLEALH FGENAAVCEV LGDLLRRDAK WVLSIEERCK  840
FLVLGRSRGG VNALKVHVFC PMSKEKRDAV RLIAARWKLS VNAAGWEPKR FIVIHVTPKS  900
KAPTRILGAK GCTVNNIAQP AVFDTPVDMD PRLVVALFDL PRDADISALV LRFGGECELV  960
WLNDKNALAV FSDPARAATA MRRLDQGSAY CGAAVVPQSG VASAGAAATN VWGVAGAVKD  1020
GGGVAALKGN PWKKAVVQEP HLRESPWDAE EWSKNPNDLA VAPSAWRVNE APSTASSNRW  1080
SILEPEITSS LPRASITMKE PISLPEGSGS VPSPKSQHVG VGDMADVVDD WDKAYD*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankAC2384620.0AC238462.1 Solanum lycopersicum chromosome 3 clone C03HBa0203H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563097.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLM1B4730.0M1B473_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000367740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1