PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g29270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 218aa    MW: 24655.7 Da    PI: 9.7446
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g29270genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.7e-164090155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +++ GVr+++ +grWvAeI++ s   ++ r +lg+f+ aeeAa a++ a++ l+g
  CA03g29270 40 KKFVGVRQRP-SGRWVAEIKETS---QKLRLWLGTFDRAEEAALAYDSAARLLRG 90
                589*******.7******99942...35***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.97E-3140100No hitNo description
SMARTSM003807.4E-3341104IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-194199IPR016177DNA-binding domain
PROSITE profilePS5103219.444198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-274198IPR001471AP2/ERF domain
PfamPF008474.2E-114190IPR001471AP2/ERF domain
PRINTSPR003679.5E-74253IPR001471AP2/ERF domain
PRINTSPR003679.5E-76480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MESSKSPSES NNSSKNIQEK QVTKTKTRTK PKPRSSNDGK KFVGVRQRPS GRWVAEIKET  60
SQKLRLWLGT FDRAEEAALA YDSAARLLRG RNAKTNFKYQ AEILKPHEEI NCSLFEKNPR  120
LYELLKHAIM RKHAGKCQNN ESLDKEEALV EESIVCEDQD RNKEEISRIQ LQGSSKVYSS  180
VIVAPSFSAS ITQSGREENH SQSNGQYFDC LLSRACK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016556214.11e-160PREDICTED: ethylene-responsive transcription factor SHINE 2-like
TrEMBLA0A1U8FIS01e-159A0A1U8FIS0_CAPAN; Uncharacterized protein
TrEMBLA0A2G3A2031e-159A0A2G3A203_CAPAN; ethylene-responsive transcription factor SHINE 2-like
STRINGXP_009762079.13e-89(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-16related to AP2 11