PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g14160
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 311aa    MW: 33967.2 Da    PI: 6.0189
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g14160genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.2e-1753102255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +++GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  CA03g14160  53 KFRGVRQRS-WGKWVAEIREPRK---RTRRWLGTFATAEDAARAYDRAAIILYG 102
                 79****999.**********954...5999*******************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.89153110IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2053110IPR016177DNA-binding domain
PfamPF008473.0E-115398IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-2953110IPR001471AP2/ERF domain
CDDcd000183.53E-2153112No hitNo description
SMARTSM003805.7E-3653116IPR001471AP2/ERF domain
PRINTSPR003679.3E-105465IPR001471AP2/ERF domain
PRINTSPR003679.3E-107692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MNGTSAGPHH PHPTQDFNPI NQEEKTITAV NDDTSTSNKR GKGKGGPDNN KFKFRGVRQR  60
SWGKWVAEIR EPRKRTRRWL GTFATAEDAA RAYDRAAIIL YGSRAQLNLQ PSGVTTSSAS  120
SSTSSRRSSS SSTTQTLRPL LPRPSGFDFS FSSSAHIPPI SPSTNVLAGG NYVPYEFYPA  180
VQYADMAQNP QQYVPCGDDV YNESATTKAW TVCSDSNPNP GHQQQEDNNQ QYQPQQQQNC  240
LYDEINTLVG SVGPSLSLCS TQMVNAAPVV SDPVAAVGCP GYPVLWPNGD DNYPPADMWD  300
YGNDPFLFDF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1754109359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567872.10.0PREDICTED: ethylene-responsive transcription factor ABI4
TrEMBLA0A2G2ZWP20.0A0A2G2ZWP2_CAPAN; Uncharacterized protein
STRINGXP_009776130.19e-86(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.12e-28ERF family protein