PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g08050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family FAR1
Protein Properties Length: 758aa    MW: 86469.4 Da    PI: 6.5769
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g08050genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.82.4e-2059152190
        FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                 +fY+++Ak++GFs+r+++++ +    + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ ++      +w++t +++ HnHel 
  CA03g08050  59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPSEDGKLQRNRKSSRCGCQAFMRIVNRAdfnVPEWRITGFSNVHNHELL 152
                 6***************999887455667********************9*******************98887676789*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-1759152IPR004330FAR1 DNA binding domain
PfamPF105514.2E-21275366IPR018289MULE transposase domain
PROSITE profilePS5096610.225551587IPR007527Zinc finger, SWIM-type
PfamPF044344.3E-8559585IPR007527Zinc finger, SWIM-type
SMARTSM005756.5E-6562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MTEITNIANE TSENGTDSSQ DDIGTVEEMP EDTILSRQTS VNLVPFIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSEDGKL QRNRKSSRCG  120
CQAFMRIVNR ADFNVPEWRI TGFSNVHNHE LLRSTEVQLI PAYCTMSPDD KSRICMFAKA  180
GMSVRQMLRL MELEKGVKLG CLTFTEVDVR SLLQSFRNVD QDNDPIDLLK LCKEMKDKEP  240
KFKYDYKIDC NNRLEHIAWS YASSMRLYEA FGDAIVFDTT HRLDAYDMLL GIWIGVDNHG  300
SLCFFGCVLL REESLQSFSW ALKTFLGFMN GKAPGTILTD QNLWLKEAIA TEIPRVKHAF  360
CIWNIISRFS DWFSTLLGSQ YDNWKAEFHR LYNLHSIEEY EVGWNEMVET YRMDGNKHIA  420
SLYALRSYWA LPFLRSFFFA GMTSTFQSET MNTYIQRILS AQSVLDNFVE QVARVVDAKD  480
QAGAKHKVLR NVQKVFLKTG SPIESHAATV LTPYAFSKLQ EELVFAPQYA SLMVDESYFV  540
VRHHKEMDGG YKVLWVPHDE FISCSCHNFE FTGILCRHVL RVLSTNNCFH IPDQYLPMRW  600
REVTSSLAKS TLFTLPSDHM GKLQLLQSMI STLINESVET EERLNVVCDE VSTVLSRIKG  660
FPTASNGGNG IAYASPSDSL ILAEVEDSEG IGQSFTCNPH ECINLSKLKE RGSRDGLDLY  720
RKRRRFSIPC CGQYGHDAND CPMMEGEDLN GDRLGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1720724RKRRR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016565829.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1
RefseqXP_016565830.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A2G2ZVM30.0A0A2G2ZVM3_CAPAN; Protein FAR1-RELATED SEQUENCE 11
STRINGSolyc09g075640.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135351416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]