PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g07810
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 519aa    MW: 57843.9 Da    PI: 5.8994
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g07810genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.85.6e-13204260155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++t+e+Aa+a++ a++k++g
  CA03g07810 204 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDTEEKAARAYDLAALKYWG 260
                 78*******************333.44555535555.77******************98 PP

2AP246.68.3e-15305354355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  CA03g07810 305 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 354
                 9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.71E-18204270No hitNo description
SuperFamilySSF541711.11E-13204268IPR016177DNA-binding domain
PfamPF008473.2E-10204260IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-12205268IPR001471AP2/ERF domain
PROSITE profilePS5103217.359205268IPR001471AP2/ERF domain
SMARTSM003801.2E-21205274IPR001471AP2/ERF domain
PRINTSPR003671.1E-6206217IPR001471AP2/ERF domain
CDDcd000182.33E-25303364No hitNo description
SuperFamilySSF541718.5E-18303364IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-18304362IPR001471AP2/ERF domain
SMARTSM003802.1E-34304368IPR001471AP2/ERF domain
PROSITE profilePS5103219.137304362IPR001471AP2/ERF domain
PfamPF008471.6E-9305354IPR001471AP2/ERF domain
PRINTSPR003671.1E-6344364IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MSNWLGFSLT PDFRIDNDID DNDDAEEVKN YVRRIEQNEA TDNIPLSVMP LSTDGSSLCM  60
MDAFPRCVPT EEDCWRYESH EMSTTTNPDG GPKLEDFLGC CYSNSPTNDE INVNIPPSVN  120
QSDHERQQLE IGANMKLMMV QNSQFQSSHH EFANTSTGNG YHVPFDGATS VSGFKSWPVA  180
GKNVSVSKEL VPRKSIDSFG QRTSQYRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQGG  240
YDTEEKAARA YDLAALKYWG PNTHINSPLS TYEKELEEMK TMNRQEFVAH LRRKSSGFSR  300
GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGTSAVTN  360
FDISRYDVKR ICSSSTLIAG DLAKRSPSKD SVVFPSSYED YNSCTTSPQP ILAITNGEQF  420
QQPVDSFMDM MPPMMAAAGS SSRSSSSAPS PKCSGSGEMS CDFGVGLEYP QAYYSSVQVQ  480
DHKFEDGRKG NNDDPPSSGR IGNMDLVHPV PMFALWNQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567464.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1U8GH900.0A0A1U8GH90_CAPAN; AP2-like ethylene-responsive transcription factor AIL1
STRINGSolyc03g123430.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-120AP2 family protein