PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g05630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 150aa    MW: 16795 Da    PI: 9.4476
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g05630genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-202173256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                +y+GVr+++ +g+++AeIrdp++   +   r +lg+f+taeeAa+a+++a+ +l+g+
  CA03g05630 21 KYRGVRRRP-WGKFAAEIRDPTT---KpsSRQWLGTFDTAEEAARAYDKAAFNLKGH 73
                8********.**********976...24499***********************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-292181IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-212182IPR016177DNA-binding domain
PfamPF008471.2E-132173IPR001471AP2/ERF domain
CDDcd000182.89E-312181No hitNo description
PROSITE profilePS5103223.9862180IPR001471AP2/ERF domain
SMARTSM003807.6E-352186IPR001471AP2/ERF domain
PRINTSPR003673.5E-112233IPR001471AP2/ERF domain
PRINTSPR003673.5E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MEGNSSRGKK SMQVEKEETI KYRGVRRRPW GKFAAEIRDP TTKPSSRQWL GTFDTAEEAA  60
RAYDKAAFNL KGHLATLNFP IEYYNKLPCP PLYHRNTICP PTNNVNSNIP RGNSSPPSSS  120
SQIIELECLD NSVLEELLGA EDPKISKRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2718831175Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568130.13e-97PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G2ZUS02e-98A0A2G2ZUS0_CAPAN; Ethylene-responsive transcription factor
STRINGSolyc09g089920.1.19e-74(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]