PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g02620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 250aa    MW: 28151.3 Da    PI: 6.3607
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g02620genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS89.74.6e-28532252172
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl....fse..vsPilkf 93 
                  elL + A+ v+++++ + ++l +  ++ as +g+++q+++ yf+ AL +r++r++ ++  + +   +  +n ++e ++   l    f +  +  + + 
  CA03g02620  53 AELLQASAQLVATRSFDRGRKLPSLCNQSASATGTAVQKIVYYFADALLHRINRETGKIPFTGEEDMNVYSNdTEEFIMD--LepaeFAKrpLYAYRQA 149
                 5789999***********************************************66655544433322222223333333..33465543225567899 PP

        GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.ppslRiTgvgspesgskeeleetgerLakfAeel 172
                 +++t  qaIl+++ ++++vH iD++++ G QW +++q  a+R+e    +l+iT+vg+    s++++e +g+rL+ fA+e+
  CA03g02620 150 TQFTGIQAILDSTITAKKVHLIDLSVKSGSQWTTFMQVVADRDEFlLEHLKITAVGR----STKMMEDVGRRLSAFAAET 225
                 9******************************************66267*********....99*************9874 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.57726249IPR005202Transcription factor GRAS
PfamPF035141.6E-2553225IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLFLESMIYP KEPLYLSSRR KVCVQSSLED LTCEITLANS GVSPELVQDV DLAELLQASA  60
QLVATRSFDR GRKLPSLCNQ SASATGTAVQ KIVYYFADAL LHRINRETGK IPFTGEEDMN  120
VYSNDTEEFI MDLEPAEFAK RPLYAYRQAT QFTGIQAILD STITAKKVHL IDLSVKSGSQ  180
WTTFMQVVAD RDEFLLEHLK ITAVGRSTKM MEDVGRRLSA FAAETLQCQL LLLRHYKTYH  240
FASKQLFQT*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754485e-69HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015160788.11e-109PREDICTED: scarecrow-like protein 28
TrEMBLA0A2G2ZU690.0A0A2G2ZU69_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000039541e-108(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85001728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-13RGA-like 2