PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g27290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TCP
Protein Properties Length: 295aa    MW: 33051.4 Da    PI: 7.1198
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g27290genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.33.4e-3154190294
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssaseceaes 77 
                  g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak++i+el+ +                       +          +
  CA02g27290  54 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKHEIDELPPLqippgnlnpnlypmlgiggnsqiN---------RE 143
                 689*************************************************************666655555555555443322210.........22 PP

         TCP  78 ssssasnsssg..............................kaaksa 94 
                  + ++snss++                              ++++++
  CA02g27290 144 GHHNKSNSSINwdnvplepsnnnplgynpnilkwdpsnlslAHSENS 190
                 22222222222444445555555667777777776655554233333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.55456114IPR017887Transcription factor TCP subgroup
PfamPF036345.5E-2856131IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MISREVNKQE SNPNDDGNTS NQNNNNKASS STSNSTTSWT RLKDPRIVRV SRAFGGKDRH  60
SKVCTVRGLR DRRVRLSVPT AIQLYDLQDR LGLNQPSKVV DWLLDAAKHE IDELPPLQIP  120
PGNLNPNLYP MLGIGGNSQI NREGHHNKSN SSINWDNVPL EPSNNNPLGY NPNILKWDPS  180
NLSLAHSENS VPHHQHDHQD IHNFNLMPSM PLGSHHQLVV YPPGLPQFFH QHNIAGASSS  240
DQFDPKEINF QMLNNSGSEN PTNSFRHPID STSQSIRPFH FLPSQNCEER ESSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1961115155Putative transcription factor PCF6
5zkt_B3e-1961115155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-128HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562255.10.0PREDICTED: transcription factor TCP13
RefseqXP_016562256.10.0PREDICTED: transcription factor TCP13
TrEMBLA0A1U8FTU40.0A0A1U8FTU4_CAPAN; Transcription factor TCP17
TrEMBLA0A2G3ABR20.0A0A2G3ABR2_CAPAN; transcription factor TCP13
STRINGPGSC0003DMT4000034531e-151(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-46plastid transcription factor 1