PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g25100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 224aa    MW: 24474.8 Da    PI: 7.7243
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g25100genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.63.5e-322103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA  r+ +Pv+Gavg++++++++++q+++e+
  CA02g25100   2 SCNGCRVLRKGCSENCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLYEAAGRTVNPVNGAVGLLWTGNWHVCQAAVET 100
                 6***********************************************************************************************999 PP

      DUF260  95 all 97 
                 +l+
  CA02g25100 101 VLR 103
                 876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.2511107IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-272101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PALFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALRPI SEFLGASLEI  120
DEVSECNNTF KLQDPSVNML QQKRRRSPKE TSMLTDLNLS LTAGFNQQVY NNSHTLPEKH  180
VRPGTPSMNS EESGTTSTCF QSVGVVIGDH YQGKEPKLLS LFN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560963.11e-166PREDICTED: LOB domain-containing protein 37
SwissprotQ9FN114e-79LBD37_ARATH; LOB domain-containing protein 37
TrEMBLK4BD511e-136K4BD51_SOLLC; Uncharacterized protein
STRINGSolyc02g092550.2.11e-136(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-80LOB domain-containing protein 37