PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g23390
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 278aa    MW: 30272.3 Da    PI: 8.0662
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g23390genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.28.2e-314107199
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++s++yeA+ r+ +P+yG+vg+++++++ql+q ++e+
  CA02g23390   4 SCNGCRVLRKGCSESCSIRPCLqwiktPESQSNATVFLAKFYGRAGLMNLINAGPHHLRPAIFRSMLYEACGRIVNPIYGSVGLLWSGNWQLCQNAVEA 102
                 6************************************************************************************************99 PP

      DUF260  95 allke 99 
                 +l ++
  CA02g23390 103 VLKGA 107
                 98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.3793109IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKT PESQSNATVF LAKFYGRAGL MNLINAGPHH  60
LRPAIFRSML YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EAVLKGAPIT PIASETAVNN  120
NGPPLKLPYD IRHISKDENN STKPSDLHRV RTRCRFKRSG NKKTKEAKPN PVCSGSGKAN  180
GSTSHESSLS HQSEAAAVAA ANLECESREI ESLQSTEMAE AEDSGMAKEE EGEIELELTL  240
GFSSSFATAH DHHIRKETKA VYLLDDAGEC KMKLGLH*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755141e-101HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560725.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-94LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1U8FPS60.0A0A1U8FPS6_CAPAN; LOB domain-containing protein 41
TrEMBLA0A2G3AAY50.0A0A2G3AAY5_CAPAN; LOB domain-containing protein 41
STRINGXP_009801662.11e-159(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-88LOB domain-containing protein 41