PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g22440
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 79aa    MW: 8964.05 Da    PI: 8.8966
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g22440genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.45.9e-12851344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+ E +++ +a + + ++   +W  Iar++g g++ +++k+++
       CA02g22440  8 AWTPRENKKFEQALAVYDKDtpdRWQNIARYVG-GKSVEEVKHHY 51
                     7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.529459IPR017884SANT domain
SMARTSM007172.2E-9557IPR001005SANT/Myb domain
PfamPF002496.0E-10851IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-14862IPR009057Homeodomain-like
CDDcd001672.83E-9851No hitNo description
Gene3DG3DSA:1.10.10.603.9E-6852IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MASNSLSAWT PRENKKFEQA LAVYDKDTPD RWQNIARYVG GKSVEEVKHH YAILVEDLKH  60
IESGDVPFPK YKSDGKSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-30175177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0488831e-130GU048883.1 Capsicum annuum clone BAC CaCM303O04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562162.11e-52PREDICTED: protein RADIALIS-like 1
SwissprotQ1A1731e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1U8FSL32e-51A0A1U8FSL3_CAPAN; Transcription factor RADIALIS
TrEMBLA0A2G2XGW12e-51A0A2G2XGW1_CAPBA; Transcription factor RADIALIS
TrEMBLA0A2G3AAH42e-51A0A2G3AAH4_CAPAN; protein RADIALIS-like 1
TrEMBLA0A2G3D7X72e-51A0A2G3D7X7_CAPCH; Transcription factor RADIALIS
STRINGXP_009603278.12e-45(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.26e-34RAD-like 6