PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g15200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family SBP
Protein Properties Length: 137aa    MW: 15718.4 Da    PI: 8.3918
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g15200genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP137.34.4e-4352127277
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 Cqve+C+ad+++ak yhrrhkvCe+hsk++ vl+sgl+qrfCqqCsrfh l efDe+krsCrrrLa+hnerrrk +
  CA02g15200  52 CQVEQCTADMANAKPYHRRHKVCEFHSKSSIVLISGLQQRFCQQCSRFHLLAEFDEAKRSCRRRLAGHNERRRKIS 127
                 *************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375751.4E-561136IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.102.6E-3544113IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.27449126IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.67E-3950130IPR004333Transcription factor, SBP-box
PfamPF031102.1E-3252125IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MDTNKWEGKR TINEAEEEED EHESVEEDNK RKRVLSPSGR KLSGGGSSHP SCQVEQCTAD  60
MANAKPYHRR HKVCEFHSKS SIVLISGLQQ RFCQQCSRFH LLAEFDEAKR SCRRRLAGHN  120
ERRRKISYDS QGESLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-3943125284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1411960.0EF141196.1 Capsicum annuum squamosa promoter binding protein-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016559832.11e-97PREDICTED: squamosa promoter-binding protein 1-like isoform X1
SwissprotQ387415e-58SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A1U8FKS83e-96A0A1U8FKS8_CAPAN; Squamosa promoter-binding-like protein
STRINGSolyc02g077920.2.13e-82(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.11e-42squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]