PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g11070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 237aa    MW: 26709.8 Da    PI: 5.9802
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g11070genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-17103152356
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                 ++GVr+++ +g+W+AeIr p     +  +r +lg+f tae+Aa+a+++ + +++ge
  CA02g11070 103 FRGVRQRP-WGKWAAEIRNP-----HkaQRLWLGTFATAEDAARAYDKKAVEFRGE 152
                 8*******.**********7.....337************************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.38102159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-31102159IPR001471AP2/ERF domain
SMARTSM003805.4E-34102165IPR001471AP2/ERF domain
CDDcd000183.24E-30103160No hitNo description
PRINTSPR003677.7E-11103114IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21103160IPR016177DNA-binding domain
PfamPF008476.3E-11103152IPR001471AP2/ERF domain
PRINTSPR003677.7E-11125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MNNDCTLPTH KLTRNQEHHY MVSALYHVLS GTDDCRMDGE PAQLLREVQN VSTSDNSMPR  60
RDIIMDSDSV QPGASSYHIG NSLNVELQQG KKRRGRRNTK KEFRGVRQRP WGKWAAEIRN  120
PHKAQRLWLG TFATAEDAAR AYDKKAVEFR GEKAKTNFPI EEYIDGVVTN DQNKTPMVVV  180
EDEEAVQNVM NGAEVAAVGA VNNTKNAVEN GMENDKDDFW ENLEEDGLVK MITRTC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21101160161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-63HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554669.11e-161PREDICTED: ethylene-responsive transcription factor ERF096-like
TrEMBLA0A2G3A6X81e-177A0A2G3A6X8_CAPAN; Ethylene-responsive transcription factor
STRINGPGSC0003DMT4000102972e-77(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.22e-28ERF family protein