PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g08620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ZF-HD
Protein Properties Length: 315aa    MW: 34525.5 Da    PI: 9.101
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g08620genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.65.2e-3255107354
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHR 54 
                   v+Y+eClkNhAa+lGghavDGCgEf+p ++++ +++++lkCaACgCHRnFHR
   CA02g08620  55 VVTYRECLKNHAAHLGGHAVDGCGEFLPIPSANpTDPTSLKCAACGCHRNFHR 107
                  689*****************************99******************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.0E-2756107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.6E-2957107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2058107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.27458109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.28E-17178248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-29182249IPR009057Homeodomain-like
TIGRFAMsTIGR015659.8E-25188245IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDLTTKTTTT TTTTSVKTPE AETETPTRIQ QQKPFPFSDG VLKRKSHHQH RHLAVVTYRE  60
CLKNHAAHLG GHAVDGCGEF LPIPSANPTD PTSLKCAACG CHRNFHRPPP ISTAALEYQP  120
HHRHHPPPPP PPCGDHSSPN SSPSPPPISS AYYPASAPHM LLALSAGFSG EKNPNPTSTL  180
VAANSNGRKR FRTKFTSDQK AKMQEFAERV EWRMQKRDED LVSNFCNEIG VEKGVLKVWM  240
HNNKNTSGKK LDQHSGNIAN NIVNGFCIAS RKDGHYDKPD SEFHLLRESS NDNKKEHSVF  300
GANVFATNGS SSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-201892461875ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14246KRKSH
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016559049.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG05e-68ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A1U8FTG10.0A0A1U8FTG1_CAPAN; zinc-finger homeodomain protein 9-like
STRINGSolyc02g067320.1.11e-135(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-66homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]