PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g08610
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ZF-HD
Protein Properties Length: 295aa    MW: 32220.5 Da    PI: 8.5278
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g08610genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer84.21.5e-2666114350
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHR 50 
                   v YkeClkNhAaslG+havDGCgEf+ps++++ +++++lkCaACgCH 
   CA02g08610  66 VVIYKECLKNHAASLGTHAVDGCGEFLPSPSSNpADPTSLKCAACGCHP 114
                  589******************************9**************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-2167113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.69169120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-1869113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.3E-2469113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.94E-18136208IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28141209IPR009057Homeodomain-like
TIGRFAMsTIGR015658.3E-25147204IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDLTNNNNNN ATATTTTTTT TVKTPEGEIE TPTQIQKVKP FPLSNGVLKR KNTLHHQHHQ  60
HHHPVVVIYK ECLKNHAASL GTHAVDGCGE FLPSPSSNPA DPTSLKCAAC GCHPSAPHML  120
LALSAGFTGE KNPNPTSAPL VANSNGRKRF RTKFTPDQKV KMLEFSESVG WKMQKRDEDL  180
VNNFCNEIGI EKGVLKVWMH NNKNTFGKKS DQHTSGEDNN NNLSHNNGNS TNNNVNGFCI  240
VSRNNSHNNT NSEFHHHHHH GQSNSDNKKD IQGIIHQLHT SDSVVATNGS SSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-201482051875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-94HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357111.11e-113PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG03e-56ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2G3A5Z50.0A0A2G3A5Z5_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000178401e-112(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.13e-51homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]