PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g07070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GeBP
Protein Properties Length: 286aa    MW: 32422.9 Da    PI: 8.6923
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g07070genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57358.61.7e-18105193597
      DUF573   5 rlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 + ws+eDei++L+Gl+  k++++ ++++ d  a+ye +k+ ++ +   ++l +K++ L++K+kk+ kk      ++ s +h+++ f+ls k+Wg
  CA02g07070 105 SSWSKEDEITILKGLVRLKTENEIKSKKiDYIALYESIKQFLHRESDIEDLKKKVKCLREKYKKNLKK-----AKTPSVPHEEELFHLSDKFWG 193
                 57*********************987777***************************************.....3445669999**********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.9E-17105193IPR007592Protein of unknown function DUF573
PfamPF105454.8E-5138177IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
SDTPCLVQSE DQMLRRAKQP PNKNKKKRCR GNDYDDVIKE ERKGKHVHLM PSLDDNYGDS  60
KEPEKKSTYA NTSMPDTDCG LGLCDQSGVL PEGLIKEKTG SSLSSSWSKE DEITILKGLV  120
RLKTENEIKS KKIDYIALYE SIKQFLHRES DIEDLKKKVK CLREKYKKNL KKAKTPSVPH  180
EEELFHLSDK FWGDGDKDHE INQQITCHSS APSCSSIRPY KSLDLEASDK IFVGDLGLAL  240
ATINRNQSNP VHVALEQYKL VSQSLRIRKC YGNQILEARI TPKMV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564018.10.0PREDICTED: uncharacterized protein LOC107862842 isoform X1
RefseqXP_016564019.10.0PREDICTED: uncharacterized protein LOC107862842 isoform X1
RefseqXP_016564020.10.0PREDICTED: uncharacterized protein LOC107862842 isoform X1
RefseqXP_016564021.10.0PREDICTED: uncharacterized protein LOC107862842 isoform X1
TrEMBLK4B4D18e-48K4B4D1_SOLLC; Peptidyl-prolyl cis-trans isomerase
TrEMBLM1B5N93e-49M1B5N9_SOLTU; Uncharacterized protein
STRINGSolyc02g005290.2.12e-47(Solanum lycopersicum)
STRINGPGSC0003DMT4000376649e-49(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1376078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.16e-06DNA-binding storekeeper protein-related transcriptional regulator