PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g05950
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 173aa    MW: 19343.6 Da    PI: 9.857
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g05950genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-1755104255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+G+ +++ +g+W+AeIrdp+    +  r++ g+f taeeAa+a++  +k+++g
  CA02g05950  55 QYRGIKQKP-WGKWAAEIRDPR----KeVRVWMGTFNTAEEAARAYDVKAKRIKG 104
                 69****999.**********84....35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.90655112IPR001471AP2/ERF domain
SMARTSM003802.4E-3155118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-3055114IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2055114IPR016177DNA-binding domain
CDDcd000187.30E-2955113No hitNo description
PRINTSPR003675.8E-115667IPR001471AP2/ERF domain
PfamPF008473.1E-1156104IPR001471AP2/ERF domain
PRINTSPR003675.8E-117894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
DDFKEFSDDE DDVEVDVKPF SFSAPKKSTG SKYVKVINSD KDAANRSSKR KRKNQYRGIK  60
QKPWGKWAAE IRDPRKEVRV WMGTFNTAEE AARAYDVKAK RIKGSKAKVN FPDEAPSPAS  120
RHSVQLNPQN GLPKESLDSV PSDSTIMNSV GDGYYDSLGF PKRETHDKAV CI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2055112260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2055112563ATERF1
3gcc_A1e-2055112563ATERF1
5wx9_A8e-20541141374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562444.11e-97PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X1
RefseqXP_016562445.17e-98PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X2
SwissprotQ6K7E63e-37ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A2G3A4D01e-116A0A2G3A4D0_CAPAN; Ethylene-responsive transcription factor 1
STRINGPGSC0003DMT4000236098e-79(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.15e-34ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]