PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g34700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 427aa    MW: 48879.2 Da    PI: 5.4769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g34700genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12242286554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 h e+Er+RR+++N++f  Lr+++P        K++Ka+ L  Av YI++L
  CA01g34700 242 HVEAERKRREKLNHRFYALRSVVPYV-----SKMDKASLLADAVTYINEL 286
                 889**********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.6E-3917165IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.85E-13236291No hitNo description
PROSITE profilePS5088816.361237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16237300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15242297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-10242286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-15243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MENLISISST SSQPNTLQKI LQYIIHNRQE CWIYAIFWQA SKDINNHLML SWGDGYFRGT  60
KDTGSAKIDH GQNVMDSEWF YMVSMPQYFV AEDDLIVQAY ASATYVWLAS YYEMQLYNCD  120
RAKEANLHGL RTIVCIATPS GVVELGSNDV IQENWEFVQF IKGLFGSNND MNTTSNLPAV  180
NQVTLEDHQK IIKDVSPQQE EDNTIKQEIT IENSDFENDD SSTINNVVNR SIKRAKKAMD  240
IHVEAERKRR EKLNHRFYAL RSVVPYVSKM DKASLLADAV TYINELKANI EDLESKLIKP  300
QNKKRHKSNN SSTTIMDQHD SHDSVSSIRT DRTNNKSLFS TRNRMEIEAK IIGSEAVIWV  360
QSLDVNYPCM RLMNAMRELE FQIYHASVSS VKDLMLQDIV IRVPEEFSNE EALKSAIATK  420
LCVIEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-27151687195Transcription factor MYC3
4rqw_B1e-27151687195Transcription factor MYC3
4rs9_A1e-27151687195Transcription factor MYC3
4yz6_A1e-27151687195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245250ERKRRE
2246251RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754474e-83HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555545.10.0PREDICTED: transcription factor MYC3-like
TrEMBLA0A1U8FIF60.0A0A1U8FIF6_CAPAN; Uncharacterized protein
TrEMBLA0A2G3APD80.0A0A2G3APD8_CAPAN; transcription factor MYC3-like
STRINGPGSC0003DMT4000150170.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-65bHLH family protein