PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g28010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 229aa    MW: 26223.1 Da    PI: 7.5005
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g28010genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1882133155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++ykGVr+++ +g+++AeIrdp     r +r +lg++ t+e+Aa a+++ + +l+g
  CA01g28010  82 KKYKGVRRRP-WGKYAAEIRDPHR---RgARLWLGTYETPEDAALAYDRTAYRLRG 133
                 59********.**********743...24*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-3082143No hitNo description
Gene3DG3DSA:3.30.730.104.1E-3083142IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2283142IPR016177DNA-binding domain
SMARTSM003808.9E-3483147IPR001471AP2/ERF domain
PfamPF008471.2E-1283133IPR001471AP2/ERF domain
PROSITE profilePS5103223.88183141IPR001471AP2/ERF domain
PRINTSPR003671.7E-98495IPR001471AP2/ERF domain
PRINTSPR003671.7E-9107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MQGLSLDFEQ NYLDNMQYLF NDPDFSQILS EIQSPRQYSS IPDHQNGIFQ QNIHQENQDS  60
VPISQETTEN VTQPILLDDR PKKYKGVRRR PWGKYAAEIR DPHRRGARLW LGTYETPEDA  120
ALAYDRTAYR LRGTSALLNF PHLIESNVTE INRVRPRRRP RTPEICSRCS SPPPSIGDNN  180
QSNNNNTDGP SSKRRNVELI NSLATANNLD SQSIIMERCL TSNNYLFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2982146468ATERF1
3gcc_A6e-2982146468ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RPRRRPR
2155161PRRRPRT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347953.12e-93PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A2G2XN611e-153A0A2G2XN61_CAPBA; Ethylene-responsive transcription factor 13
STRINGPGSC0003DMT4000670138e-93(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-33ethylene responsive element binding factor 1