PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g27980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 209aa    MW: 23754 Da    PI: 9.3223
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g27980genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-1969122355
         AP2   3 ykGVrwdkkrgrWvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+++Ae+rdp+  ++  + r++lg++ t+e+Aa a+++a+ kl+g
  CA01g27980  69 YRGVRRRR-WGKFAAEVRDPTRkRNnNNNRVWLGTYETPEDAALAYDRAAYKLRG 122
                 9****777.**********666655467*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.6768130IPR001471AP2/ERF domain
PfamPF008475.2E-1368122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-2868131IPR001471AP2/ERF domain
SMARTSM003807.5E-3268136IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2068131IPR016177DNA-binding domain
PRINTSPR003677.2E-136980IPR001471AP2/ERF domain
CDDcd000187.14E-2177132No hitNo description
PRINTSPR003677.2E-13112132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MQPVAFDLSN ILCYDDPFEH YDFFENSEII SPFNNITSAI GYSSDDSTPS PTPILSTVER  60
RAXXXXXXYR GVRRRRWGKF AAEVRDPTRK RNNNNNRVWL GTYETPEDAA LAYDRAAYKL  120
RGTKALLNFP HLICSNVTDD HYNRVRPKRR LGLNSLDEIS IASTKTSTTN EYSPSAKRRN  180
VELINSLAKA NLNSHSIMER FNQLGASC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2569136669ATERF1
3gcc_A2e-2569136669ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561519.11e-129PREDICTED: ethylene-responsive transcription factor 13
TrEMBLA0A2G3AHG01e-146A0A2G3AHG0_CAPAN; Ethylene-responsive transcription factor 1
STRINGPGSC0003DMT4000910025e-63(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-27ethylene-responsive element binding factor 13