PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g16860
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 192aa    MW: 21420.8 Da    PI: 4.9352
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g16860genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.2e-211867255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y+G+r++  +g+W+AeIrdp++     r++lg+f taeeAa+a+++a+k+++g
  CA01g16860 18 KYRGIRQRT-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDEAAKRIRG 67
                8*****999.**********954...4************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.13E-341877No hitNo description
PROSITE profilePS5103224.0121875IPR001471AP2/ERF domain
PfamPF008473.2E-141867IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-231877IPR016177DNA-binding domain
SMARTSM003802.9E-381881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-331876IPR001471AP2/ERF domain
PRINTSPR003671.3E-111930IPR001471AP2/ERF domain
PRINTSPR003671.3E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
TSLKVEKESS GSRPRKNKYR GIRQRTWGKW AAEIRDPRKG VRVWLGTFNT AEEAARAYDE  60
AAKRIRGDKA KLNFPQSLST PSPPAKRQCA STTVPDPPAL LESSNIISDN SSLMNFGYPN  120
ETVPYYPMEV AAAADQDNHH DDYELKEQIS NLESFLELEP ADSSQFSGIV DSDPFNVFLM  180
EDFAATQQPV Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-23582179Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2595996e-74HQ259599.1 Petunia x hybrida ethylene-responsive-element-binding factor 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581889.11e-141PREDICTED: ethylene-responsive transcription factor RAP2-3
SwissprotP427368e-43RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A1U8HMX91e-139A0A1U8HMX9_CAPAN; Ethylene-responsive transcription factor
TrEMBLA0A2G3AIS31e-139A0A2G3AIS3_CAPAN; ethylene-responsive transcription factor RAP2-3
STRINGPGSC0003DMT4000433117e-94(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-34ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Bueso E, et al.
    The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene.
    Plant J., 2007. 52(6): p. 1052-65
    [PMID:17931347]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen YC, et al.
    Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance.
    Sci Rep, 2014. 4: p. 5584
    [PMID:24998294]
  4. Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB
    Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis.
    New Phytol., 2015. 208(2): p. 442-55
    [PMID:25988998]
  5. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  6. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  7. Liu W, et al.
    Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency.
    Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868
    [PMID:28390898]
  8. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]