PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g12930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 360aa    MW: 40974.3 Da    PI: 10.4145
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g12930genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19127176154
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                 +++kGVr+++ +g+W+AeIrd     + ++r +lg+f+taeeAa a+++a+ +++
  CA01g12930 127 KKHKGVRQRR-WGKWAAEIRDtR---N-KTRLWLGTFDTAEEAALAYDKAAIEIR 176
                 589****998.**********33...2.5**********************9987 PP

2AP261.51.9e-19273323256
         AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +y+GVr++k +g+W+AeIrd      k++r +lg+f+ta eAa a+++a+ +++g+
  CA01g12930 273 KYRGVRRRK-WGKWAAEIRDtR----KKTRLWLGTFDTALEAALAYDKAAIEIRGA 323
                 8*****998.**********33....36*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.00E-27127176No hitNo description
SMARTSM003801.0E-26128191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-24128177IPR001471AP2/ERF domain
PROSITE profilePS5103220.126128187IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-18128177IPR016177DNA-binding domain
PfamPF008474.5E-14128177IPR001471AP2/ERF domain
CDDcd000188.62E-30273328No hitNo description
SMARTSM003804.1E-33273336IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-28273328IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-20273329IPR016177DNA-binding domain
PROSITE profilePS5103222.023273330IPR001471AP2/ERF domain
PfamPF008471.9E-14273322IPR001471AP2/ERF domain
PRINTSPR003674.2E-10274285IPR001471AP2/ERF domain
PRINTSPR003674.2E-10296312IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MKCMHVPSDG LFVLFFVVFH EAMASKDKLK ENEAVTKPSE IDKVEKSTNQ VGESSVVLPR  60
VVRIYMPDSD ATDSSSDEKE RPQGEKSKRH EKTCIKEIII ENGKTRVISK KMSKEKKDIK  120
LLQENVKKHK GVRQRRWGKW AAEIRDTRNK TRLWLGTFDT AEEAALAYDK AAIEIRALAS  180
KEGLQEKGVV KKTSNQVGQI SSILPRLVRI DVPDHDTTDS SSDEEEKVEE KSEGQKRTSV  240
KKIICENGKT KVISKKMSKE EKDLNLMQEN VNKYRGVRRR KWGKWAAEIR DTRKKTRLWL  300
GTFDTALEAA LAYDKAAIEI RGANAMTNIL KPPPKKFNPI KINFIVPPLK RQKADPLHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-191283381376Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-172HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577756.10.0PREDICTED: ethylene-responsive transcription factor CRF3-like isoform X1
TrEMBLA0A1U8H2P90.0A0A1U8H2P9_CAPAN; Uncharacterized protein
TrEMBLA0A2G3AHY20.0A0A2G3AHY2_CAPAN; ethylene-responsive transcription factor CRF3-like isoform X1
STRINGPGSC0003DMT4000584421e-173(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.15e-17cytokinin response factor 1