PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g12920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 96aa    MW: 11279.9 Da    PI: 11.2509
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g12920genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-202676155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++ykGVr++k +grW+AeIrd ++   ++r++lg+f+tae+A  a+++a+ +++g
  CA01g12920 26 KKYKGVRQRK-WGRWAAEIRDKRN---NTRHWLGTFDTAEKAVVAYDEAAIEING 76
                69*******9.**********533...4***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.69E-242683No hitNo description
PfamPF008478.7E-142776IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-192783IPR016177DNA-binding domain
SMARTSM003802.8E-252790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-252781IPR001471AP2/ERF domain
PROSITE profilePS5103220.1392784IPR001471AP2/ERF domain
PRINTSPR003672.4E-92839IPR001471AP2/ERF domain
PRINTSPR003672.4E-95066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MSENGRNRVI SKKKSKEKKL LQVNMKKYKG VRQRKWGRWA AEIRDKRNNT RHWLGTFDTA  60
EKAVVAYDEA AIEINGANGL TIFWWHHQRK STPER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-172683159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-172683462ATERF1
3gcc_A9e-172683462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555416.16e-39PREDICTED: ethylene-responsive transcription factor CRF4-like
SwissprotQ3E7033e-20ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A2G3AI144e-63A0A2G3AI14_CAPAN; Uncharacterized protein
STRINGXP_009783397.13e-29(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-22cytokinin response factor 4