PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g12900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 75aa    MW: 8575.8 Da    PI: 10.1015
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g12900genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.4e-21757155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++y+GVr++k +grWvAeIrd ++   ++r++lg+f+taeeA  a+++ + +++g
  CA01g12900  7 KKYRGVRQRK-WGRWVAEIRDKRN---NTRHWLGTFDTAEEAGVAYDEVAIEING 57
                69*******9.**********533...4**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.57E-28763No hitNo description
Gene3DG3DSA:3.30.730.102.0E-28864IPR001471AP2/ERF domain
PfamPF008471.7E-14857IPR001471AP2/ERF domain
PROSITE profilePS5103220.218865IPR001471AP2/ERF domain
SMARTSM003802.6E-29871IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21864IPR016177DNA-binding domain
PRINTSPR003672.4E-10920IPR001471AP2/ERF domain
PRINTSPR003672.4E-103147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
LLQVNMKKYR GVRQRKWGRW VAEIRDKRNN TRHWLGTFDT AEEAGVAYDE VAIEINGANA  60
LTNILEPPLK KIDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-18764159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555416.15e-43PREDICTED: ethylene-responsive transcription factor CRF4-like
SwissprotQ9M3746e-22CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLA0A2G3AHZ28e-48A0A2G3AHZ2_CAPAN; Uncharacterized protein
STRINGSolyc01g014720.1.15e-30(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.12e-24cytokinin response factor 6