PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g12880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 94aa    MW: 10774.5 Da    PI: 11.0465
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g12880genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP270.72.5e-222676155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++y+GVr++k +grWvAeIrd + n  ++r++lg+f+taeeAa a+++a+ +++g
  CA01g12880 26 KKYRGVRQRK-WGRWVAEIRDKK-N--NTRHWLGTFDTAEEAAVAYDKAAIEING 76
                69*******9.**********53.3..4***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.70E-302682No hitNo description
PfamPF008472.3E-152776IPR001471AP2/ERF domain
PROSITE profilePS5103221.4832784IPR001471AP2/ERF domain
SMARTSM003801.0E-332790IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-222783IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-302783IPR001471AP2/ERF domain
PRINTSPR003676.2E-112839IPR001471AP2/ERF domain
PRINTSPR003676.2E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MIENGRTRVI SKKKSKEKKL LQVNMKKYRG VRQRKWGRWV AEIRDKKNNT RHWLGTFDTA  60
EEAAVAYDKA AIEINGANAL TNILEPPLKK INP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-202689162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-202689465ATERF1
3gcc_A9e-202689465ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555416.13e-50PREDICTED: ethylene-responsive transcription factor CRF4-like
SwissprotO823392e-23CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLA0A2G3AHX91e-60A0A2G3AHX9_CAPAN; Ethylene-responsive transcription factor CRF4
STRINGXP_009783397.11e-35(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.13e-16cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]