PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g12870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 70aa    MW: 8048.14 Da    PI: 9.8867
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g12870genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19250153
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                ++y+GVr++k +grWvAeIrd ++   ++r++lg+f+taeeA  a ++ + ++
  CA01g12870  2 KKYRGVRQRK-WGRWVAEIRDKRN---NTRHWLGTFDTAEEAVVASDEEAIEI 50
                69*******9.**********533...4**************99999988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.85E-24258No hitNo description
PfamPF008475.7E-13345IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-26359IPR001471AP2/ERF domain
SMARTSM003801.2E-24366IPR001471AP2/ERF domain
PROSITE profilePS5103218.334360IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-19359IPR016177DNA-binding domain
PRINTSPR003672.2E-10415IPR001471AP2/ERF domain
PRINTSPR003672.2E-102642IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MKKYRGVRQR KWGRWVAEIR DKRNNTRHWL GTFDTAEEAV VASDEEAIEI TDANALTNIL  60
EPPLKKINP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-15265162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-15265465ATERF1
3gcc_A2e-15265465ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577801.17e-45PREDICTED: ethylene-responsive transcription factor CRF1-like
SwissprotQ9M3741e-19CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLA0A1U8H2U52e-43A0A1U8H2U5_CAPAN; ethylene-responsive transcription factor CRF1-like
STRINGSolyc01g008890.2.16e-25(Solanum lycopersicum)
STRINGSolyc01g014720.1.13e-25(Solanum lycopersicum)
STRINGPGSC0003DMT4000584429e-25(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-14related to AP2 4