PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g12410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 135aa    MW: 15597.9 Da    PI: 10.0753
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g12410genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.3e-2167117155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++y+GVr++k +grW+AeI+d ++n  ++r++lg+f+taeeAa a+++a+ +++g
  CA01g12410  67 KKYRGVRQRK-WGRWAAEIQD-KIN--NTRHWLGTFDTAEEAAVAYDEAAIEING 117
                 59*******9.**********.345..4***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.2E-361127IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000186.68E-3067123No hitNo description
SMARTSM003801.8E-3268131IPR001471AP2/ERF domain
PROSITE profilePS5103221.00868125IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-2168124IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-2868123IPR001471AP2/ERF domain
PfamPF008474.3E-1568117IPR001471AP2/ERF domain
PRINTSPR003679.8E-116980IPR001471AP2/ERF domain
PRINTSPR003679.8E-1191107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MPRVVRIYMT DNDATDSSSD EEEMLQGEKS QRPKKLWIKE IMIENERTRV ISKKKSKEKK  60
LLQVNMKKYR GVRQRKWGRW AAEIQDKINN TRHWLGTFDT AEEAAVAYDE AAIEINGANA  120
LTNILEPPPK KINP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1867133467ATERF1
3gcc_A2e-1867133467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555416.16e-95PREDICTED: ethylene-responsive transcription factor CRF4-like
SwissprotQ9SUE35e-33CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A1U8F9P91e-93A0A1U8F9P9_CAPAN; ethylene-responsive transcription factor CRF4-like
TrEMBLA0A2G3AI163e-92A0A2G3AI16_CAPAN; Uncharacterized protein
STRINGSolyc01g014720.1.16e-52(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-23cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]