PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g10190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family FAR1
Protein Properties Length: 72aa    MW: 8284.25 Da    PI: 4.6724
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g10190genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1371.1e-113370141
        FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkr 41
                kfY +YA + GFsvr+s+s++   +++i++++fvCskeg+r
  CA01g10190 33 KFYLDYADRSGFSVRISRSRT---DKSIIDQEFVCSKEGFR 70
                6***************98666...599************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.5E-93370IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MNAVVPFTPQ FDNEETRVPY IGMEFQSPDI AYKFYLDYAD RSGFSVRISR SRTDKSIIDQ  60
EFVCSKEGFR S*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025884696.15e-30protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_025884722.13e-29protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025888960.14e-28protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2G3AGI32e-45A0A2G3AGI3_CAPAN; Uncharacterized protein
STRINGSolyc02g092170.1.13e-30(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA645860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.13e-13FAR1-related sequence 12