PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g07960
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bZIP
Protein Properties Length: 408aa    MW: 43030.3 Da    PI: 7.1814
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g07960genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_165.11.2e-20303365163
                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ el++l+ e ++l +++
  CA01g07960 303 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLKEENASLRTELSRLRSEHDQLAAQN 365
                 89*******************************************************999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.3E-31195IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165969.9E-51134270No hitNo description
Gene3DG3DSA:1.20.5.1705.1E-18296364No hitNo description
SMARTSM003381.5E-21303367IPR004827Basic-leucine zipper domain
PfamPF001705.4E-19303365IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.357305368IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.19E-11306362No hitNo description
CDDcd147021.05E-23308359No hitNo description
PROSITE patternPS000360310325IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGSSDIDKSS KEAKEAKTPN SQEQASSAAT GTVNPDWSAF QGYSPMPPHG FMASSPQAHP  60
YMWGVQHLMP PYGTPPHPYV AMYPHGGIYA HPSIPPGSYP FSPFAMPSPN GIAEVAVNTS  120
GNAEVDGKSS EGKEKLPIKR SKGSLGSLNM ITGKNNEHVK TSGASANGGY SKSAESRSGE  180
GSSEGSDANS QNESPMKSAG GQDSAEEASQ NGNSAHSSQN GGISAPHSLV NQTMAIMPMS  240
AVGAGGVPGP TTNLNIGMDY WNAAASPSIP AIHGKVPPAS VAGGMVTAGS RDIVQSQMWI  300
QDERELKRQR RKQSNRESAR RSRLRKQAEC DELAQRAEVL KEENASLRTE LSRLRSEHDQ  360
LAAQNASLKE RLGEVPGRDD PRPSRNDIPL NNGIQHSSQT EPTQGGQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319325RRSRLRK
2319326RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139800.0BT013980.1 Lycopersicon esculentum clone 133025R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571517.10.0PREDICTED: bZIP transcription factor 16
SwissprotQ501B21e-163BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A1U8GJQ50.0A0A1U8GJQ5_CAPAN; Uncharacterized protein
TrEMBLA0A2G3AFT40.0A0A2G3AFT4_CAPAN; bZIP transcription factor 16
STRINGSolyc08g076100.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30652446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-156basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]