PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g01920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 326aa    MW: 36947 Da    PI: 6.0515
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g01920genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.41.5e-28136194259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s ++  ++++tY+ eHnh+
  CA01g01920 136 SDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSCTEHGIFIVTYTAEHNHS 194
                 79*************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-30121196IPR003657WRKY domain
PROSITE profilePS5081131.422130196IPR003657WRKY domain
SuperFamilySSF1182902.22E-25132196IPR003657WRKY domain
SMARTSM007744.2E-33135195IPR003657WRKY domain
PfamPF031065.4E-24137193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MIMDWGLQAV VIGSSSTSCS DIHGSNYVDF SPNLDFQESE YLSFSHHHHQ HHEMKKEVYS  60
DELEQLYKPF YHVGGQNMLM GSSISLVPKE VIKEEKREEE QQQVVAASNT YVPKYKKRKN  120
EQKRVVLQLK ADDLSSDKWA WRKYGQKPIK GSPYPRSYYR CSSSKGCLAR KQVEQSCTEH  180
GIFIVTYTAE HNHSQPTRRN SLAGTTKSKF PNSKNSINSP KKIVKEEKIT SPHCSTSNLG  240
LSPEAARMID EFPEINQENN IIIGGDNNYY DEDGMRNIFE GSDENECVSI EEMFDGDFFA  300
GLEDIHDGFN SSFGCNNSAF PFSST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-17124196274WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755204e-73HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
GenBankHG9754474e-73HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552689.10.0PREDICTED: probable WRKY transcription factor 29
TrEMBLM1AWU61e-165M1AWU6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000320911e-164(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.19e-34WRKY family protein