PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g01870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 1013aa    MW: 114351 Da    PI: 9.842
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g01870genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.51.1e-104588552
         AP2  5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                G+r++k +gr+ A I d    +k+k ++lg+f+t eeAa+a+   +++
  CA01g01870 45 GIRRRK-SGRYSATITDR---NKHKEVYLGTFDTIEEAAQAYQSKKLE 88
                9**999.7******9993...456*****************9776655 PP

2AP228.44.2e-09168215354
         AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                 + G+ ++k +gr+ A I d +    k+k ++lg+f+t eeA +a+   + ++e
  CA01g01870 168 VIGIKRRK-SGRYSATITDrV----KHKEVYLGTFDTTEEASQAYFSKKSEFE 215
                 67999888.7*********54....35******************87776666 PP

3AP237.75.2e-12225273152
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                 +++ GV+ +k +gr++++Ir p    ++ kr+++g+f taeeAa+a+   +++
  CA01g01870 225 PHIIGVHKRKVTGRYESQIRNP----ISkKRIWVGSFSTAEEAARAYQSKKLE 273
                 5789*****************7....246******************776665 PP

4AP236.31.4e-11354401556
         AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                 G+ ++k +gr++AeI dp    +r kr +lg+f+t eeA +a+   + ++e+e
  CA01g01870 354 GIKRRK-SGRYAAEITDP----IRhKRLWLGTFDTVEEASQAYLSKKFEFENE 401
                 888888.8*********7....357******************9999999876 PP

5AP235.42.7e-11467514556
         AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                 G+ ++k +gr++AeI dp    +r k+++lg+f+t eeA +a+   + ++e+e
  CA01g01870 467 GIKRRK-SGRYAAEITDP----IRhKKVWLGTFDTVEEASQAYLSKKSEFENE 514
                 888888.8*********7....357******************9998888875 PP

6AP232.62e-10600644553
         AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                 G+r++k +gr+ A I dp     + k+++lg+f+t eeA +a+   + ++
  CA01g01870 600 GIRRRK-SGRYSAKITDPM----KhKQVYLGTFDTIEEASQAYLTKKSEF 644
                 99*999.7*********84....35******************8776665 PP

7AP229.41.9e-09720766555
         AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 G+ ++k +gr++AeI dp    +r kr  lg+f+t eeA +a+   + ++e+
  CA01g01870 720 GIKRRK-SGRYAAEITDP----IRhKRLLLGTFDTVEEASQAYLSKKSEYEK 766
                 888888.8*********7....357******************999888875 PP

8AP233.41.1e-10801847251
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 
                 ++ GV+ +k +gr+ ++I+ p    ++ kr++lg+f taeeA +a+   ++
  CA01g01870 801 HIVGVHKRKATGRYTSQIKNP----ISkKRIWLGSFRTAEEASQAYQSKKL 847
                 789**************9997....246*****************976665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.36542106IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-104489IPR016177DNA-binding domain
PfamPF008473.6E-74485IPR001471AP2/ERF domain
CDDcd000182.06E-114582No hitNo description
SMARTSM003808.1E-54596IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-124589IPR001471AP2/ERF domain
PROSITE profilePS5103210.415164225IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-8168213IPR016177DNA-binding domain
PfamPF008479.9E-5168215IPR001471AP2/ERF domain
SMARTSM003800.0093170215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-9170207IPR001471AP2/ERF domain
PfamPF008478.9E-7225270IPR001471AP2/ERF domain
SMARTSM003802.0E-8226281IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-11226275IPR016177DNA-binding domain
PROSITE profilePS5103214.104226288IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-13229274IPR001471AP2/ERF domain
CDDcd000183.63E-12229267No hitNo description
PROSITE profilePS5103214.816351413IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-11352400IPR016177DNA-binding domain
SMARTSM003803.0E-5354405IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-13354400IPR001471AP2/ERF domain
CDDcd000182.15E-13354391No hitNo description
PfamPF008471.1E-6354401IPR001471AP2/ERF domain
PROSITE profilePS5103213.88464526IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-10466511IPR016177DNA-binding domain
SMARTSM003807.0E-5467532IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-13467506IPR001471AP2/ERF domain
CDDcd000181.89E-12467504No hitNo description
PfamPF008471.2E-6467514IPR001471AP2/ERF domain
PROSITE profilePS5103212.892597657IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-10599643IPR016177DNA-binding domain
PfamPF008477.7E-5599645IPR001471AP2/ERF domain
SMARTSM003807.3E-5600663IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-11600637IPR001471AP2/ERF domain
CDDcd000185.58E-12600637No hitNo description
PROSITE profilePS5103212.194717757IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-9719763IPR016177DNA-binding domain
SMARTSM003806.4E-4720763IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-11720757IPR001471AP2/ERF domain
CDDcd000182.02E-11720757No hitNo description
PfamPF008471.1E-4720766IPR001471AP2/ERF domain
PfamPF008478.4E-5800845IPR001471AP2/ERF domain
SMARTSM003801.2E-6801856IPR001471AP2/ERF domain
PROSITE profilePS5103213.88801864IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-9802850IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-11804849IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1013 aa     Download sequence    Send to blast
MESSSIAING TSAVVMAERS KKRDGENLKQ PKEPESTKAT RSLIGIRRRK SGRYSATITD  60
RNKHKEVYLG TFDTIEEAAQ AYQSKKLEFQ KIVDANRQCG NEIDVQISNS TNDGAEQRID  120
GQELGIVEED FRVYQSKKQR EFSCLMGKES SDECNITTSC DSNVKRSVIG IKRRKSGRYS  180
ATITDRVKHK EVYLGTFDTT EEASQAYFSK KSEFEKKYDP HKTTPHIIGV HKRKVTGRYE  240
SQIRNPISKK RIWVGSFSTA EEAARAYQSK KLEFQKLVDA KGQCGNENDV QISNSENDGA  300
ERKIDCHETG IVEEDFRVYP SEEKREFSCL KSKESSDEYD ITTSDSNVKK SLIGIKRRKS  360
GRYAAEITDP IRHKRLWLGT FDTVEEASQA YLSKKFEFEN EKLRQQGNKK NKPIKSFDQI  420
WPESPVVETL DTASMGRRNA RIDSQTSSDE CNTTTRCDPK SKRSLIGIKR RKSGRYAAEI  480
TDPIRHKKVW LGTFDTVEEA SQAYLSKKSE FENEKLRQQG NKKNKPTKSF DQIWPESPVV  540
ETLNTANMGR RSIRIDSQGK EPGSSKATSG LRTNVRGDES SDECNITTNG DPKAKISLIG  600
IRRRKSGRYS AKITDPMKHK QVYLGTFDTI EEASQAYLTK KSEFEKVSQR GEKENKPKRN  660
CDQIQHESSV METFNTTSMG RRNARIDSQG KELRFSEKTS SDGCNTTTRC DPKSKRSLIG  720
IKRRKSGRYA AEITDPIRHK RLLLGTFDTV EEASQAYLSK KSEYEKLSQG NKEDRSKKKC  780
DQVQQPESSP VAAASLPVDT HIVGVHKRKA TGRYTSQIKN PISKKRIWLG SFRTAEEASQ  840
AYQSKKLEFQ KLVEAKQQQR ANKKQTHSKH DGKSKKLVNV KQEHENDNCE LKSAGGSEIK  900
GPISNSSSGG ADQRINSHET GALEEAFHAY LSKKLDSQSS KEVEVQNNMP TDSSAGKKQD  960
GQEDDKDILM GQWIQLPGDR EVMFSLKLGL PIIDNYGSLL GEFSSMDDLS IS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027775191.10.0uncharacterized protein LOC114078472
TrEMBLA0A2G3ADK60.0A0A2G3ADK6_CAPAN; Ethylene-responsive transcription factor
STRINGPGSC0003DMT4000317510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-14ERF family protein