PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g01850
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 431aa    MW: 48622.9 Da    PI: 10.0228
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g01850genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2292.7e-0982128555
         AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 G+   k +gr+vA+I dp     + k++++g f+t eeA +a+   + ++e+
  CA01g01850  82 GIKKQK-NGRYVARITDPI----KhKQVHVGVFDTIEEASQAYLSKKSEFEN 128
                 777666.8*********72....46******************988877765 PP

2AP224.85.3e-08160199345
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45 
                 + G + +kk+gr+ + I  p    ++ k++slg+f+taeeA +a
  CA01g01850 160 IIGAYMRKKTGRYYSKITNP----ITkKKISLGTFDTAEEASRA 199
                 667799********998886....246**************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.00779141IPR001471AP2/ERF domain
PROSITE profilePS5103210.00779137IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-881128IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.8E-881134IPR001471AP2/ERF domain
SMARTSM003800.027159214IPR001471AP2/ERF domain
PROSITE profilePS5103210.665159222IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-8161208IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-8166207IPR001471AP2/ERF domain
PROSITE profilePS510329.704285342IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-5285329IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAMKTDGIAL FTDEEEETCY KKQKTRKVSE IFVDKVNSTN HSCLMSIGKK TGLMTKVRGA  60
ESCDECNVST CCDSKAKISL TGIKKQKNGR YVARITDPIK HKQVHVGVFD TIEEASQAYL  120
SKKSEFENKW KKNFEQPESP SVSASGRDRR IDSRERTTRI IGAYMRKKTG RYYSKITNPI  180
TKKKISLGTF DTAEEASRAF QSKKLQFQKL VDVKQEQCAN KHSRSNQDGT TLSGGLVNVK  240
RERENLICHE RFQHGGEAFR VCQSKNKQAF SCNTTTSWNT KAKRSFVGIK RQMDGGYAAV  300
ITDRVKHRKV WFDTFDTIEE SSQAYSSKKS EFEELSQQGN KENKSMKNCD QIQQPESSSV  360
VSRREKRIDS HGKEAGSSKA RSCLMTNVCG GESPDERSIT TNCDPKAKIS LIGIRRRKSG  420
EICSCDYRPN *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G3DAV70.0A0A2G3DAV7_CAPCH; Ethylene-responsive transcription factor
STRINGPGSC0003DMT4000317513e-74(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-10erf domain protein 9