PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g01840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 334aa    MW: 38061 Da    PI: 10.2577
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g01840genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.32.1e-091664355
         AP2  3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                 +G+r+   +gr+ A I d    + +rk+++lg+f+t eeA +a+   + +l++
  CA01g01840 16 LRGIRRQQ-NGRYGAVITD----QiRRKQVRLGTFDTVEEASQAYFSKKSELKN 64
                59**9766.9*********....4456******************998888876 PP

2AP231.25.6e-1090135554
         AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                 G+r++k +gr+ A I dp     + k ++lg+f+t e+A +a+ + + ++e
  CA01g01840  90 GIRRRK-SGRYSAKITDPI----KhKEVYLGTFDTIEQASQAYFNKKSEFE 135
                 9**999.7*********72....46******************98877766 PP

3AP224.66.5e-08192227745
         AP2   7 rwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45 
                 +  k+ gr+ +eI +p     + k+++lg+fgtaeeA  a
  CA01g01840 192 YKSKTAGRYTSEIIHPI----TkKKIWLGTFGTAEEASHA 227
                 678999*********72....36**************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.0081575IPR001471AP2/ERF domain
PfamPF008472.0E-41564IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-91665IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-91764IPR001471AP2/ERF domain
SMARTSM003800.00441776IPR001471AP2/ERF domain
PROSITE profilePS5103212.03687147IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-1089133IPR016177DNA-binding domain
PfamPF008477.9E-589135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-1190128IPR001471AP2/ERF domain
SMARTSM003802.8E-490153IPR001471AP2/ERF domain
CDDcd000184.18E-1190127No hitNo description
PROSITE profilePS5103211.772187258IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-8188236IPR016177DNA-binding domain
SMARTSM003800.01191242IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-10195236IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MYRAQNQPIP TAKRCLRGIR RQQNGRYGAV ITDQIRRKQV RLGTFDTVEE ASQAYFSKKS  60
ELKNEKLNQQ CTNMHTRSEQ GPKDEISLIG IRRRKSGRYS AKITDPIKHK EVYLGTFDTI  120
EQASQAYFNK KSEFEKLRQQ GQTENIRKKN CDQIQQPESP TVVASLDTAA SARGRDKRTD  180
SHITTPLMIG AYKSKTAGRY TSEIIHPITK KKIWLGTFGT AEEASHAFQS KKLEFQKLVK  240
AKKQQCTQSK SEKLVNFKQG TAEETFHVNQ SKKFDLQSSK EVELQSDIPT DSSAGKKQEG  300
QEDDEDLWMG KWVQLPGDRE VMFSLILGLP NHR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566267.11e-151PREDICTED: uncharacterized protein LOC107864421
TrEMBLA0A2G3ADR20.0A0A2G3ADR2_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000317441e-113(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.26e-12ERF family protein