PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g01830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 573aa    MW: 65322.5 Da    PI: 9.9375
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g01830genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.31.4e-112674456
         AP2  4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                 GVr+ k +gr++ eIrdp    +r k+++lg+f+ta+eA +a+   + ++e+e
  CA01g01830 26 VGVRRQK-NGRYAGEIRDP----IRhKKVWLGTFDTAQEASQAYLSKKSEFENE 74
                59**888.8*********7....357******************9998888875 PP

2AP2301.3e-0992139252
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                 ++ GV+ + k+g++ + Ir p    ++  r++lg+f+ aeeA +a+   +++
  CA01g01830  92 RVVGVHKRNKQGKYNSAIRNP----ITeERIWLGSFDNAEEASQAYQSKKLE 139
                 799*****************7....347*****************9776665 PP

3AP226.81.3e-08216262354
         AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                 + G+ + k +gr++A I d +     + +++ g+f+t eeA +a+   + ++e
  CA01g01830 216 FVGIKRQK-NGRYAAVITDrV-----KHKIWFGTFDTIEEASRAYLSKKFEFE 262
                 78998777.8*********55.....69*****************98888876 PP

4AP224.66.3e-08309354554
         AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                 G+r++k +gr++A I dp    +r k + lg+f+t +eA +a+   + ++e
  CA01g01830 309 GIRRRK-SGRYAAVITDP----IRhKEVCLGTFDTIDEASQAYKSKKSEFE 354
                 9**999.7*********7....357******************88776665 PP

5AP2224.1e-07403440545
         AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45 
                 G +  k+ gr+ +eI +p     + k+ +lg+fgtaeeA  a
  CA01g01830 403 GAYKSKTAGRYTSEIIHPI----TkKKTWLGTFGTAEEASHA 440
                 5578899**********72....36**************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.6E-62478IPR001471AP2/ERF domain
PROSITE profilePS5103214.2362483IPR001471AP2/ERF domain
PfamPF008473.6E-62674IPR001471AP2/ERF domain
CDDcd000182.56E-142664No hitNo description
SuperFamilySSF541711.05E-102671IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-132765IPR001471AP2/ERF domain
SMARTSM003804.0E-492158IPR001471AP2/ERF domain
PROSITE profilePS5103213.64392152IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-993140IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-1195141IPR001471AP2/ERF domain
PROSITE profilePS5103211.825215275IPR001471AP2/ERF domain
SMARTSM003800.004215281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-9216261IPR001471AP2/ERF domain
PfamPF008471.6E-4216263IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-8216261IPR016177DNA-binding domain
PROSITE profilePS5103210.876306365IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-9308352IPR016177DNA-binding domain
SMARTSM003800.0038309376IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-9309350IPR001471AP2/ERF domain
PROSITE profilePS5103211.719400471IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-8400449IPR016177DNA-binding domain
SMARTSM003800.027404455IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-10408448IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MDTKLVVNVK QMKEPESSKA KMISLVGVRR QKNGRYAGEI RDPIRHKKVW LGTFDTAQEA  60
SQAYLSKKSE FENEKLSHQG NEKSKRIRET TRVVGVHKRN KQGKYNSAIR NPITEERIWL  120
GSFDNAEEAS QAYQSKKLEF NAMLQRCSTN KDGHSEQGNE NVNGEVFETD SCNGGTDRRI  180
DPREIGTTEE AKEGSKVFNS CLISNVRVNP KDKTTFVGIK RQKNGRYAAV ITDRVKHKIW  240
FGTFDTIEEA SRAYLSKKFE FEKLRQQGKT ENNLKKNCDQ IQHPESTSVV ETLNTATSCD  300
LKARRSLIGI RRRKSGRYAA VITDPIRHKE VCLGTFDTID EASQAYKSKK SEFEKLRQGN  360
KENKRKKNCD QIQRPQVASL DTASEYGRAK RINNHNTTPH MIGAYKSKTA GRYTSEIIHP  420
ITKKKTWLGT FGTAEEASHA FQSKKLEFQK LVKAKKQQCI QRKSEKLVNF KQGTAEETFH  480
VKQSKVFDLQ SSKEVELQSD TPTDSRARKN QEGQEDDEDL WKGKWVQLPD NTEVMFSSKL  540
GLPIIDNYGY LLGEFSTLDD LSICVTEDDN QM*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566267.10.0PREDICTED: uncharacterized protein LOC107864421
TrEMBLA0A2G3ADK30.0A0A2G3ADK3_CAPAN; Ethylene-responsive transcription factor 9
STRINGPGSC0003DMT4000317440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-13ERF family protein