PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g00280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 435aa    MW: 49072.4 Da    PI: 7.1778
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g00280genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.5e-12258304354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h e+Er RR+++N++f  Lr+++P+       K++Ka+ L  Av YI++L
  CA01g00280 258 KNHVEAERLRREKLNHRFYALRSVVPNV-----SKMDKASLLADAVTYINEL 304
                 589************************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-3521172IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.52255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.66E-14258309No hitNo description
PfamPF000106.4E-10258304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-17259321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17259320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-15261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MMQEITSTSS STTSPALLNT LQKRLQYIIH TLQEWWVYAI FWQASKDANG RLIFSWEDGH  60
FRGTKDLAMA EVRITNADNN VGDPEMFYAV SATNCFVSED DLITHTYNSG FYIWLNNYYE  120
SQLYNYDRAK EAHLHGIRTL VCISTPHGVV ELGSSEVIQE NLELIQLNRS LFGLSNKNSP  180
SQTNHQGLSS FNFVPLGSHH IQKVDTNNNP EIYIGNKSSD SGNSDYDNES SAMYNINSPK  240
KRGRKSSSST KTERIMAKNH VEAERLRREK LNHRFYALRS VVPNVSKMDK ASLLADAVTY  300
INELKAKVEE LETSKSECQK PKRNYVDTVM EMYGSRNNIN SSFGWCNSTG AYGIEVEVKI  360
IGVEAMVRVR SPNVSYPCAR LMNVLRELEL QIHHASVASV KDMMIQDVVI GIPRNLTNEE  420
ALKSVILTKL SVIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-22259315864Transcription factor MYC2
5gnj_B1e-22259315864Transcription factor MYC2
5gnj_E1e-22259315864Transcription factor MYC2
5gnj_F1e-22259315864Transcription factor MYC2
5gnj_G1e-22259315864Transcription factor MYC2
5gnj_I1e-22259315864Transcription factor MYC2
5gnj_M1e-22259315864Transcription factor MYC2
5gnj_N1e-22259315864Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552541.10.0PREDICTED: transcription factor bHLH14-like
TrEMBLA0A2G3AD800.0A0A2G3AD80_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000318990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-65bHLH family protein