PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g96280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family G2-like
Protein Properties Length: 209aa    MW: 23748.1 Da    PI: 9.7857
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g96280genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.72.9e-29138188252
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ 
  CA00g96280 138 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQV 188
                 9*************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-14135191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-26135188IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-22138189IPR006447Myb domain, plants
PfamPF002492.7E-6139189IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVESTNSMLN NNSNTCSCFE LSLSNNPTKP NNYSCDPNSS HHLQNYILQQ NQRIITTREL  60
GFLMQPIRGI PVYHQKPFDN TITTFPIPSS SNCSILNNIN NNNTISSCDS TSPNFQQGGF  120
LRSRFYSRFP GKRSTRAPRM RWTSTLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA  180
HVKSHLQVHI VKTFCYFSLI MPLHLKFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-16139187452Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-16139187452Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-16139187351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-16139187351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-16139187351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-16139187351Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-16139187452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-16139187452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-16139187452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-16139187452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-16139187452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-16139187452Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:11395775, ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:14561401, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928, ECO:0000269|PubMed:18849474, ECO:0000269|PubMed:20179097}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269|PubMed:18849474}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016573194.11e-124PREDICTED: probable transcription factor KAN2
SwissprotQ93WJ91e-43KAN1_ARATH; Transcription repressor KAN1
TrEMBLA0A2G3AFV71e-135A0A2G3AFV7_CAPAN; Uncharacterized protein (Fragment)
STRINGSolyc08g076400.2.18e-71(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27382255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.16e-37G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang T,Kerstetter RA,Irish VF
    APUM23, a PUF family protein, functions in leaf development and organ polarity in Arabidopsis.
    J. Exp. Bot., 2014. 65(4): p. 1181-91
    [PMID:24449383]
  3. Mach J
    Getting in Shape? Leaves work it out with KANADI1.
    Plant Cell, 2014. 26(1): p. 4
    [PMID:24464293]
  4. Jun SE, et al.
    Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12.
    Mol. Cells, 2015. 38(3): p. 243-50
    [PMID:25518926]
  5. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  6. Xie Y, et al.
    Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways.
    Plant Physiol., 2015. 169(2): p. 1240-53
    [PMID:26246448]
  7. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  8. Singh A, et al.
    Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 3408
    [PMID:28611467]
  9. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]
  10. Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F
    Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers.
    Development, 2018.
    [PMID:29361563]