PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g85560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 212aa    MW: 23703.7 Da    PI: 4.6197
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g85560genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.93.2e-101291622055
         AP2  20 rdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +dp +ng  +r++lg++ tae+Aa a+++a+ +++g
  CA00g85560 129 WDPAKNG--ARVWLGTYETAEDAALAYDKAAFRMRG 162
                 3465565..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.72490170IPR001471AP2/ERF domain
SMARTSM003802.9E-16122176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18129170IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-13129172IPR016177DNA-binding domain
CDDcd000189.51E-19129170No hitNo description
PfamPF008471.6E-6133162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MFGNIDFEND YALLQSIKLQ LLEDWEWENP PATSSENYAS SYGRNNSMES NTNTLSNVFS  60
NEFDYTLSNV FPNEFDYTSD STFVSDFHND CIGHERQPSS VKSEPEIWNF SEYAAPPETR  120
VVVAXQSRWD PAKNGARVWL GTYETAEDAA LAYDKAAFRM RGSRALLNFP LRINSGEPEP  180
VRVGSKKSST SPECSSSSSS SSGKRRKKIP V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-251301772370ATERF1
3gcc_A3e-251301772370ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016553616.11e-130PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A2G3AF071e-145A0A2G3AF07_CAPAN; Ethylene-responsive transcription factor 1 (Fragment)
STRINGSolyc08g078170.1.12e-71(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.13e-25ethylene responsive element binding factor 2