PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g85250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 457aa    MW: 50286 Da    PI: 8.3398
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g85250genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.8e-17133182155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  CA00g85250 133 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 182
                 78*******************......55************************997 PP

2AP239.41.5e-12225273153
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                 s+++GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k 
  CA00g85250 225 SKFRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKT 273
                 79********.7******5553..2.26**********99**********886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-16133191IPR016177DNA-binding domain
PfamPF008476.7E-9133182IPR001471AP2/ERF domain
PROSITE profilePS5103217.556134190IPR001471AP2/ERF domain
CDDcd000183.69E-24134192No hitNo description
SMARTSM003803.5E-32134196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-17134191IPR001471AP2/ERF domain
CDDcd000182.68E-24225285No hitNo description
SuperFamilySSF541713.47E-16225284IPR016177DNA-binding domain
PfamPF008471.1E-7225272IPR001471AP2/ERF domain
SMARTSM003801.6E-29226289IPR001471AP2/ERF domain
PROSITE profilePS5103215.132226283IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-15226283IPR001471AP2/ERF domain
PRINTSPR003672.4E-5227238IPR001471AP2/ERF domain
PRINTSPR003672.4E-5265285IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MMLDLNVNVI YNELPEGSVP DESGTSNSSL LNAEATTSTG DGESCSTRAG EMFAFNFGIL  60
KVGGAETSRN INNNDEDRRV VSHSEFVTRQ LFPVDNGELN RKQTDRVILP GFGSELPKPQ  120
VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHTAA RAYDRAAIKF  180
RGVDADINFN LSDYEEDMKQ MKNLGKEEFV HLLRRHSNGF SRGSSKFRGV TLHKCGRWEA  240
RMGQFLGKKY IYLGLFDSEV EAARAYDKAA IKTSGREAVT NFEPSAYEGE TMSEPQIEGS  300
QHDLDLNLGI STSSSKENGR LGGSCYHPYD IQDATKPKMH KPDPLIVGSS HLKGLPMTSQ  360
QAQSWTGIYS NFSSSYEGRT SDKRKDIGSS QGPPNWSLQM PSQVATTTPL TMFCTAASSG  420
FFVPATASIT SSTSALAPST NASQCFYQIS PRLPPP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5869540.0HQ586954.1 Solanum lycopersicum AP2 transcription factor SlAP2e mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577819.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ84TB51e-107AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A1U8HBN20.0A0A1U8HBN2_CAPAN; Floral homeotic protein APETALA 2
TrEMBLA0A2G2ZDT00.0A0A2G2ZDT0_CAPAN; ethylene-responsive transcription factor RAP2-7-like isoform X1
STRINGSolyc06g075510.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-111related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]