PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g79790
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 65aa    MW: 7530.03 Da    PI: 10.1604
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g79790genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.7e-191355247
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47
                +y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f taeeAa+a++
  CA00g79790 13 KYRGIRRRP-WGKYAAEIRDPNRNG--ARLWLGTFETAEEAARAYD 55
                8********.**********96665..******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-121355IPR001471AP2/ERF domain
PROSITE profilePS5103219.8621355IPR001471AP2/ERF domain
SMARTSM003802.2E-191363IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-251356IPR001471AP2/ERF domain
CDDcd000183.94E-191355No hitNo description
SuperFamilySSF541711.96E-181356IPR016177DNA-binding domain
PRINTSPR003675.3E-121425IPR001471AP2/ERF domain
PRINTSPR003675.3E-123753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MENEDHRGRR ENKYRGIRRR PWGKYAAEIR DPNRNGARLW LGTFETAEEA ARAYDXPSGH  60
PQLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-201455647ATERF1
3gcc_A5e-201455647ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754482e-65HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567929.15e-33PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC53e-22ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G2ZXZ63e-38A0A2G2ZXZ6_CAPAN; Ethylene-responsive transcription factor
STRINGSolyc09g066350.1.12e-31(Solanum lycopersicum)
STRINGPGSC0003DMT4000266782e-31(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]