PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g76770
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family FAR1
Protein Properties Length: 723aa    MW: 82863.9 Da    PI: 7.1013
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g76770genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR11011.2e-3164155291
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+  +++ +r+r+ tr+gCka l vk +++gkw+v+++++eHnHel+p
  CA00g76770  64 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKAALSVKIQDSGKWVVSNFVKEHNHELVP 155
                 9***************************************998888545677889***********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.2E-3064155IPR004330FAR1 DNA binding domain
PfamPF105511.1E-31276368IPR018289MULE transposase domain
PfamPF044344.8E-12544590IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.263556592IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-9567594IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MNFGGGGSED GDVDGDDVLD EENVSHGNFA AVPSYSYSPP QGDLLDLEPY EGMLFESEEA  60
AKAFYNSYAR RVGFSTRVSS SRRSRKDGAI IQRSFVCAKE GFRNLNEKRT KDREIKRPRT  120
ITRVGCKAAL SVKIQDSGKW VVSNFVKEHN HELVPPDQVH CLRSHRQISG PAKTLIDTLQ  180
AAGMGPRRIM SALIKEYGGI SKVGFTEVDC RNYMRNNRQR SLEGDIQLLL DYLKHMNIQN  240
PGFFYAVQGD EDQCTGNVFW ADSKARTNYI YFGDTVTFDT TYRSNRYRLP FAPFTGVNHH  300
GQPVLFGCAF LINESEASFI WLFKTWLAAM SGQPPLSMTT DHDAVISSAI MQVFPETRHR  360
FCKWHIFKKC QEKLSHVFLE HPNFEADFHK CVNLTESTEE FETCWLSLVD KYGLRDHDWL  420
QLIYLDRRQW VQVYLRDTFF AEMSITQRSD SMNSYFDGYV NASTNLNQFF KLYEKAVESR  480
TEKEVKADYD TMNAFPVLKT PSPMEKQASE VYTKKLFMRF QEELVATLTF MANKVEDDGL  540
VTTYQVAKFG DDHRAYYVRF NVLEMKATCS CQMFEFSGLL CRHVLAVFRV TNVLTLPSHY  600
ILKRWSRSAK SNVALEDRVA DIINCYLESH TVRYNMLRHE AFKFVEKGAE TADSYAVAMT  660
ALEEASKKVS LVVKHDGRIS LVNGHCRENL IRNGVRGNYN IEDEQRSLAC PLAEVSHFLF  720
FV*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016540073.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2G2XW380.0A0A2G2XW38_CAPAN; Protein FAR1-RELATED SEQUENCE 5
STRINGSolyc01g112320.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]